Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02290 ATGCCCCCGCGGCGGTGCTTAGCGTCAGCGGCGCGGCAGTTATCGGACTTGGAGATCGACAGCGATTACGACAGCGACGACGACAGACTCACGATGCGCTGCATTTCCTGCGATGAGGAGTACGACCCTGACGACGCCGGAACCTGCAAGGAGTGCTACGATGAAGCCAACGAGACCAGGGAAGAACTCAAGCGTCAGATCCAAGACTTGAAGTCTAAGGTTTCCTTCCTCGCCCTCTCTTCTCCCCTCGACGCTCCTTCCACCACCGATCTCGTCCTCGTTCCCTCCGCTGATGCTTCCGCTCCCTCCGTTCCCGCTCACAAGGCCGTTCTGGTTAGTCGCTCTCCAGTTTTCAGAGCCATGCTGGAGAATGACATGGAGGAAAGCCGGAGTGGCACCATCAAGATCACTGATGTATCATATGATGCTCTTCGTGCTTTTGTTAATTATTTATACACTGCTGAGGCATGCCTTGATAACCAAATGGCCTGTAACCTATTGGTTTTAGCAGAAAAGTATCAGGTGAAACATCTTAAGATATATTGTGAGAAGTATTTGATCGCCAAACTGAATTGGGAAAAAGCTATTGCAAACTATGCCTTTGCACATCAACACAATGCGAACCAATTGCTAGATGCAGCCTTGGCCGTGATCATAGACAACATGGACCGCCTCACTAAAAATGAAGATTATATGGAGCTGGTGGACAGTAATCCTCGTCTTGTTGTGGAAATTTATGAAGCATATCTTGCCAAACAGGTTAATACTGCAGCTACACTTAGGCAATAG 789 0.4905 MPPRRCLASAARQLSDLEIDSDYDSDDDRLTMRCISCDEEYDPDDAGTCKECYDEANETREELKRQIQDLKSKVSFLALSSPLDAPSTTDLVLVPSADASAPSVPAHKAVLVSRSPVFRAMLENDMEESRSGTIKITDVSYDALRAFVNYLYTAEACLDNQMACNLLVLAEKYQVKHLKIYCEKYLIAKLNWEKAIANYAFAHQHNANQLLDAALAVIIDNMDRLTKNEDYMELVDSNPRLVVEIYEAYLAKQVNTAATLRQ. 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02290 262 Gene3D - 192 262 - -
Seca3g02290 262 Pfam BTB/POZ domain 84 189 IPR000210 GO:0005515
Seca3g02290 262 Coils Coil 49 80 - -
Seca3g02290 262 CDD BTB_POZ_ZBTB_KLHL-like 103 173 - -
Seca3g02290 262 SUPERFAMILY POZ domain 87 187 IPR011333 -
Seca3g02290 262 ProSiteProfiles BTB domain profile. 89 160 IPR000210 GO:0005515
Seca3g02290 262 PANTHER SPECKLE-TYPE POZ PROTEIN 49 255 - -
Seca3g02290 262 SMART BTB_4 89 190 IPR000210 GO:0005515
Seca3g02290 262 Gene3D Potassium Channel Kv1.1; Chain A 56 191 IPR011333 -
Seca3g02290 262 FunFam BTB/POZ domain-containing protein 192 261 - -
Seca3g02290 262 CDD BACK 199 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02290 Seca-Chr3 40569525 40572698 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca3g02290 BTB 9.4e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02290 K10523 - zju:107421125 343.969