Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02286 ATGCTTCTATATCACACTTACTCACTCACTCAATCTCCATTCCAACAATCATCCAAACGACATCGCACCCTGACTCTGATCCCTGTTCTGAACAAAAAAATGCAGCATACTGTTCCGGCCGGAGAAACCACCGGAGGAAGTTCCGGTGGCCGGAAGGTGGTGGTGGGGGTGAAGCTGGACTCCCCTAGCAAAGAGCTTCTCACGTGGGCTTTGGTTAAAGTTGCTCACCCTGGTGATACTGTCGTTGCTCTGCATGTTCTCGGGAACCATGGAATTGTGAATGGAGATGGGAAATCGTCTCTGCTTGGGCTTGTCAAGGCATTTGACTCTGTTCTTGCTGTTTATGAAGGATTCTGCAATTTGAAACAGGTGTGTCTCAAGCTCAAAGTTTGCCGTGGTTCATCAGTGAAGAAAATTTTGGTTCGAGAAGCAAATACTTATTCTGCAACTCATGTTGTGGTTGGAACTGCTCAGGGCCTTCATAAAATCCGGTCATCTACCTCTGTAGCTAAGCACTGTGCTAAAAAGTTATCCAAGAACTGCTGTGTTCTTGCTGTTAACAATGGGAAAATTGTTTTCAAGCGTGACAGCTTGTCATCAAATGTAGCTGAAACACAAGGGATTGATCTTCATCATAGAAATGGTTTGTTTGGTTCAATTCATTGGACTCTCAGTAAAGGCACAAAAGTACTGAGTGATGAGGGAAGTAGCCACATTTCAGATCACAGTTTAGCTAAGGTTCTTCTGGATTCTACAGAAGAAGTTGTTAGAAAACAGAGCTGCACAATTTGTGGCACAACCCCTGAATTGCAAAACACTTCTAGTTCTAGCCACCAATCTGAAGAAGGGTCTTCTGGTGATGGTGGCAGTGAGAATTCTTTGGCTATAGTGCCTGTACAGACCACAGATGCAGGACAACCTGAATTAAAACCAGGTTGGCCACTTCTTAACCGGAGGATTTTATCAGACAGACAATCTCTTGACAGATCATTGATGTGCCACCAGACCTCTGTGGTCCAGTGGGCTATGAGGTTGCCTTGTAGAAATCTTTCATATGGTGTAGATCATGATAGAAAACCTAACATTAATGATCAAGGTCAAGGTCAACCTGTGGCTTTAGATAGTGAAAGTGGTGCTCTTGTTCCAGCAGGTACTGAAATAGGGACAGCCTCTTTGCCTGAACGCAACTCAAGAAGTATTCCTAAAGAATTGGAGGGCCTTCATGAGAAATACTCATCAACTTGTAGATTGTTTGAGTACCAAGAACTTGTATCAGCAACATCAAATTTCTTGCCTGAAAACTTGATTGGGAAAGGAGGAAGTAGTAAGGTTTATAAAGGATGCCTTCCTGATGGCAAGGAACTTGCTGTTAAGATCCTAAAGCCTTCTGATGATGTTTTGAAGGAGTTCCTTTCAGAAATAGAGATCATCACTACCTTGCATCACAAAAACATTATCTCCCTCCTTGGGTTCTGCTTTGAGAATGGCAATCTTCTTTTGGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAATCTACATGTAGGGAATAAGAAAAATCCATGTATGTTTGGTTGGACTGAGAGATATAAGGTAGCAATGGGTGTTGCTGAGGCTTTAGATTATCTGCATTGTAAAGATGATCAACCTGTGATCCATAGGGATGTAAAATCATCAAATGTATTATTATATGAGGATTTTGAGCCCCAGCTCTCTGATTTTGGACTGGCTAAGTGGGCATCAACCTCGTCATCACATATAACCTGCACAGATGTTGCAGGAACCTTTGGTTATTTGGCTCCTGAATACTTCATGTATGGAAAAGTAAATGAGAAGATTGATGTCTATGCATTTGGTGTTGTGCTCCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGGTGATTATCCAAAAGGTCAAGAGAGTCTTGTTATGTGGGCAAGTCCAATTCTAAATAGTGGAAAGGTGTCACAATTGTTTGATCCTAGTTTGGGTGATAACTATGATCATGAGGAGATGGAAAGGATGGTCTTAGCAGCCACTCTTTGTATCAGACGTGCTCCAAGAGCTAGGCCTCAAATGAGTCTTATTTGTAAGCTCCTTCAAGGTGATACTGATGCAATCAAGTGGGCAAGGATAGAAGTTAATGCTTTGGTAGCACCTGAAATGCTTGACGATGAAGCATGTCCACCTAGCAATATACAATCACATCTTAATTTGGCACTGCTTAATGTGGAGGATGACTCACTCTCCATGTGCAGTGTTGTGCAAAGTGTCTCATTGGAGGACTACTTGAGAGGCAGATGTAGCCGTTCATCAAGCTTTGACTGA 2334 0.4246 MLLYHTYSLTQSPFQQSSKRHRTLTLIPVLNKKMQHTVPAGETTGGSSGGRKVVVGVKLDSPSKELLTWALVKVAHPGDTVVALHVLGNHGIVNGDGKSSLLGLVKAFDSVLAVYEGFCNLKQVCLKLKVCRGSSVKKILVREANTYSATHVVVGTAQGLHKIRSSTSVAKHCAKKLSKNCCVLAVNNGKIVFKRDSLSSNVAETQGIDLHHRNGLFGSIHWTLSKGTKVLSDEGSSHISDHSLAKVLLDSTEEVVRKQSCTICGTTPELQNTSSSSHQSEEGSSGDGGSENSLAIVPVQTTDAGQPELKPGWPLLNRRILSDRQSLDRSLMCHQTSVVQWAMRLPCRNLSYGVDHDRKPNINDQGQGQPVALDSESGALVPAGTEIGTASLPERNSRSIPKELEGLHEKYSSTCRLFEYQELVSATSNFLPENLIGKGGSSKVYKGCLPDGKELAVKILKPSDDVLKEFLSEIEIITTLHHKNIISLLGFCFENGNLLLVYDFLSRGSLEENLHVGNKKNPCMFGWTERYKVAMGVAEALDYLHCKDDQPVIHRDVKSSNVLLYEDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYLAPEYFMYGKVNEKIDVYAFGVVLLELLSGRKPISGDYPKGQESLVMWASPILNSGKVSQLFDPSLGDNYDHEEMERMVLAATLCIRRAPRARPQMSLICKLLQGDTDAIKWARIEVNALVAPEMLDDEACPPSNIQSHLNLALLNVEDDSLSMCSVVQSVSLEDYLRGRCSRSSSFD. 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02286 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 552 564 IPR008271 GO:0004672|GO:0006468
Seca3g02286 777 Gene3D Transferase(Phosphotransferase) domain 1 505 717 - -
Seca3g02286 777 Pfam Universal stress protein family 51 182 IPR006016 -
Seca3g02286 777 SUPERFAMILY Protein kinase-like (PK-like) 411 702 IPR011009 -
Seca3g02286 777 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 399 504 - -
Seca3g02286 777 PANTHER OS08G0249100 PROTEIN 133 713 IPR046958 -
Seca3g02286 777 FunFam Putative receptor-like serine/threonine-protein kinase 505 718 - -
Seca3g02286 777 ProSiteProfiles Protein kinase domain profile. 430 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02286 777 Pfam Protein kinase domain 434 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02286 777 Gene3D HUPs 50 188 IPR014729 -
Seca3g02286 777 SMART serkin_6 430 725 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02286 777 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 50 187 - -
Seca3g02286 777 CDD USP_Like 52 186 - -
Seca3g02286 777 ProSitePatterns Protein kinases ATP-binding region signature. 436 458 IPR017441 GO:0005524
Seca3g02286 777 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 51 190 - -
Seca3g02286 777 MobiDBLite consensus disorder prediction 267 293 - -
Seca3g02286 777 Gene3D Phosphorylase Kinase; domain 1 395 504 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02286 Seca-Chr3 40520071 40523898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02286 417 698 Trihelix Transcription Factor Family AT1G68690 46.690 2.14e-75 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca3g02286 Pkinase 2.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02286 - - pcin:129303222 1047.34