Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02284 ATGGGCTCGTGTGGGGAATCTGCTATCGATGACGATTCCTTAGGAGGGTCTGTTGTTGAGAAACACATGTGTTCAGAGATTCCGGTACAGTTAGTTTCTGTGCAGAAGTCATGTTCAGAAGAAGCTCGCAATGTGTTGGACTCTAATGTTGACCTCTCCGATATGGCCGATGGTTGTATAGGAGAGGGCTATGAGGGTTCTGCAAGCTTTGTTGATGTTACTGAGGGGTCTAGAGATGTTTTGGCAAATGAATGTGAAAATGCTGATGTGTCGCGATTGGAGAAAACTGCTGAAGATGATTGTCAGAATTGTTTGGGGATTTGTTGTGAGGACAGTGAAGTTTCCTGTCTAAAAGGTGGTGGGTTCAGCTCAGAAGGAAATTTTCAAGATGAAGGCACCACAGCCACAAATAGTTTGCAGAAGCATTGTGCTCAACAGGGTGAGCAGAAGGATGATAGGAGCAACATTTTATTATCTGCAGGAGATGGTTCAGGAGTCATGGAAGGAAAAAATGATGACACTGGTTTACTCGCTGATGCTTTCAATTGTGCGCTTGATTCCAGGCATTCTGAAATGTCTTCGGAACCAGAATACATGGCTGACTTGCTAGTTGATTGCAACCCTCAAAATGAACCAGAGGAGATTATGAGAAATGCAGATACCTTGTCGAAGGTTGAGGAAAAATGTAATGCTTTAGATGGGATGGAAGCCGATGCTTGCAGGAAGATGTCTCCTTCACAGGGTATGGAAGTGCTGTCAGGTGCATTATGTACAGATACAGAAGTGAAGAGCACAAGTGATGAGCTATGTGATCAGAAAGAGGGTGAGGATTGGAATAGTACCTGTGAAGAAAAGGCTAAAGCTGTTATTGATAAAGAAATCACTATTGATTCAGATGTACAAGTATCATTCTCACAAGGTTGCCATAGGACCTTGGGGAGTTTACCTGTAGTTGATTCAGTTTGTGAGCCTACCTTGCTGGATCCGGGGAATGAAATGAAAAATGGTATACTGCAAATAGAAGATAACTTCTGTAAATTGAAGGACTGTTCCGCAGAGGGACCTGCCAACTCTACCTTTAATAAACCATTTTATCCAGAATCAGGTCATCCCTCAGTTGTTTTAATCACCAATAGCTCTTCAAAAGATGTACCTGATCTCCTTTCTAACGGTGATGATGTTTCCATCAATAATAATAGTGCTGTGGACAATTCTGGACAGACAAATAATGATGGAAAAGAAGCTGTTGAAGTTGATTGTATCACTGAAAGCATACAGTTACCTTCTCAAAGGAATAGTCGAAGAACCAAATTTGGTTGCAAGACACAAACCAAAAAGGCTTCAAGAAAATGCAAGAACAAAGCCGGTGTGACACATCCAGGTGGGGGTATGAAGATAAACTTAGAGGCTTCTAGAAAGAAAAGAAGTTGTTTATCCAAACCAGCTCGTTCTTCTATCTGGGGATTGCTTGGAAACATTAAACAGTTTTTTCCGCAAGATAATAAGATAGAAGTCAGTGAAGCCATGTGCCGGGAATTGGGGAAGGCTAGAAGCAAGCGTCAAGGTGGGAAAGCGATTAAGAACAGTGCAAATTCTAGCTCATTGAATTCAGTGCAGAAGTACTCTGTTTCAACTTCAACTACTCGTGTTCGTCTAAAGATCAAGTTTGGAAAAGAAATTGATTTAAGTAGCTCAAATGTCTTGATTCCAGAGGCTGTTGGTGGCTTGGCATCTGCTTCCTACTTGGGGTCTGATTTAGGTTCTCAGAAAGTAGCTAGCAATGCTGAAGATAGAATTTCTGAAGTGGTGGCTTTGGGCAATTTAGAATCTTTCAAAACTGACCTGGATAAGGATGGTCTTGTTCTGAATGGGCAAATTGCAAATTGCCACTTACAAAATACTGAAATAACGGAGAAGTCAGATGGGGATACTGAGGAACCATGTCTTGAAGTTCCTCCACAGAAGGAGGTTGAAGCATTACATAAGCCAATGAATGATAAGGCTATGGATCCTGGAACTTCACCTGATTCAGAAGTTATCAATTCAGTTCCAGAAGTCCAGGTTGGAGAAAGACATGAAGAAGATGTACATCATGCTGTTTTAGGTTCTTCTAAGGAGTTCAATTCTAATTTGGATGTTATCATCAGTGAGAGAGGGAAGAAGAAAGACAAGCTTATTTGTTCAGGTAATTATATCACTGAAGACGGATCCCAAGGTCCAACAGGGAAAAATAGAGCTAAGCAGTCAAAGAATCGCAGACGTAAAAAGAATTGCAGTGACGCTGTTAGCTCTATGGAATTGCCTACTTCCACTGAGATAAGCAAATCGGTAAACAGTAAAGAATTGTCTACAGAATCATTGCCTCTTTCTGGAGTGATTGAATTTGGAGGCTCCACTGAGGCTTTGAAAGATAAAAGTCACATGGAAGTTGAGACAACTTGCAAACCATCTGTTGACCATGGATTTTCAGAATACCAGGGTTCTGAGAATTTGCTCTGTTCTGCAAGATCTTTGGGGCGTAAACTACCGAAAAGTCTTCAACCTAGTAAAGTTAGCAAGGCCAAACCTAAAGCTTCTGACTCAATGAGCAGGAAAAAGACAAGTTCCAGACGCAAGGAGAAACAGAAGAAGCCAATCAGTAAAAGTGAAGTCAAGGGAAAAGGTGTCTCTCTTAAAGTTAAATGTGAAGTGGAAGACCACCCACATCCAGCAGCAGGTGTAGTTGGAAATCATAAGGTGGACGCTGTTGGAAAAAATAATGCCAGTGACAACAGAGTATCAGTCAATGTATCTAATTTGGACATGTTGCCTGGTGTTGGTTTGGGAGAGCAACATCTATCACCACGTAACGCATGGGTGCGTTGTGATGATTGTCACAAGTGGCGGCGTATTCAAGCTGTGCTTGCAGACCGGATTGATGAAACTAACTGCAACTGGACATGTAAGGACAGCAGTGATAAAGAGTTTGCTGATTGTAGTATCCCTCAAGAAAAGTCAAATGCAGAGATTAATGCAGAATTGGGATTATCAGATGCCTCTGGTGAAGAAGATGTGTATGAAGACTCGAAAAATTACAAGGAATTGGGATATCGACGACCATTTGTTTCTCAGGAGTCAACTTTTACCCGTATTTTCACCAATGAGTTTCTGCATCGTAGTCGTAAAACTCAGACTATTGATGAGATAATGGTCTGCCATTGCAAGCCCCCTCAAGAAGGCAGGTTGGGCTGTGGGGATGAATGTCTAAACCGGATGCTTAACATTGAATGTGTGCAAGGAACCTGCCCATGTGGGGACTGTTGTTCCAATCAGCAGTTCCAAAAACGCAAGTATGCCAGCCTGAAGTGGTTTAAATGTGGGAAAAAAGGTTATGGACTAAAGGCAGTTGAGGATGTAGCTAAAGGACAGTTTCTTATTGAATACGTTGGAGAGGTGCTTGATATGCAAGCTTATGAGGCACGGCAGAGAGAGTATGCTTTGAAGGGTCATAGACATTTCTATTTTATGACCTTGAATGGGAGTGAGGTGATAGATGCGAGTGCAAAAGGAAACTTGGGGCGTTTCATTAATCATAGCTGTGATCCTAATTGTCGGACAGAAAAGTGGATGGTGAATGGGGAAATCTGTATTGGACTGTTTGCATTGAGGGATATTAAGAAGGGTGAAGAATTGACATTTGATTACAACTATGTAAGGGTTTTTGGTGCTGCTGCCAAAAAATGTTATTGTGGTTCACCTCATTGTCGAGGTTATATAGGTGGTGGTGATCCACTCAATGCTGAACTGATAGTTCAAGGTGATTCAGATGAAGAATTTCCAGAACCTGTGATGCTTAATAGAGATGGTGACATTGAGGACAGTGTGCCTATACCCGAATACTTTGATAATGTTGATACACTGTCTTCTAAGTATTTGTTAAAAGACAGGGATGTACTGGACAAGTCTACAACTGCTACAGATGCAAATGGTTCTCCAGAGAAAGAGAGCTCTATGAACCCTGCCTCTGCTGTTTCCCTGTTGCACAGCTCAGTTGAAGTGAATGACTCAAAGGGCAAGTTACCATCTTCTATTCGAACAGAAGAAATTTCTCTCCAAATGGAGGATATAACAAGCAAACGCATGGCTGCTGATCAACAAAGATATGCAATGGAGTCAGAGTCTGCAGACAAAACTTCCTCCCTTACAACTGTCAGCAAAGTGTTATCGAATTCTACGGGTAGTGATAAAGAATCCAAGTCTGAAATAATTGAAGGCAGGAGTGATTTTTCACTACCACACCTGCATGTGAAGACTCCAAAACTAAATAATTCTGTTAAAAAGGGAAAAGTTCGTGCTAATCCTGCGGATGGTCTTAAAGCTGAGGTGACAGCCAACCGATTGCAGGTGTCATCTATCAAAAACAAAAAAGTAGAAGGTTCTTCCAATGGGCGGTTTGAAGCAGTTCAGGAGAAACTTAATGAGTTGCTGGATGGAGATGGGGGAATAAGCAAAAGAAAAGATGCCACCAAAGGCTACTTGAAGCTTTTGCTTCTTACTGTGGCATCTGGCGATAGAAGCAATGGTGAAGCAATTCAGAGCAATCGAGATCTTTCCATGATTCTTGATGCCCTTCTGAAAACAAAATCTAGAGCAGTGCTGAATGATATAATTAACAAAAATGGTTTACAGATGTTACATAACATAATGAAGCAGTACAGGCAGGACTTCAAAAAAATCCCGATACTACGGAAGCTTCTTAAGGTCTTAGAGTACCTAGCAGCAAGCAAGATATTGACATCTGAACATATCAATGGTGGTCCTCCTTGTCATGGAATGGAGAGCTTTCGGGAGTCAATGCTGTCTCTGACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGAGACAGATGGATTCCCAGACCTGTCAGAAAACATGGCTATATGGACAGGGATGATAATAGGGTGGAATCTCACAGAAGTTTCAACTGTAACAGATTTTCAGCATCACACAATCATAGGCATGAGCAGGATTCAAGACCTACAGAAGCAATTGATTGTGGTCAGCAGTCAATGGTTGTGACAACTTCAGTAGATGCTGCTACCCCGGAGGGCTGCTCTACACTGTCTATAGATAGGGTTGAAATCAAAGGGACCAAAAAACGTAAGCGCAAAAGCCGATGGGATCAACCAGCAGAAACAAATTCACATTCTGATGCAGTTATTAGTTCTACTGATGAAAGCCAGAATATTCATGAAGATGTTCCACCAGGATTTTCATGTCCAATACGTTCATTAAATGCTTCACTAAACTCTGGTGATCCTGCTTTGCAGAATGCAAGCCATTCCGGATGTCCCTCTGATTTAGTTATTGGTCATCCAAAAGAGAAATTTAACTCTCGCTTGCCTGTCTCATATGGAATTCCATGGTCTGTTGTCCAGCAATATGGAACACCGCATGCTGAAATCACAGGGTGTTGGGTCACTGCACCTGGCATGCCTTTCAACCCATTTCCCCCCCTACCCCCATATCCACGGGATGACAAAGACTGTCAACCTTCTAATACTACTAATGCCATGACAATTGACAAGCCTGCTGAAGTTCAGCAGTGTGATACTAGTGGTCTGGTTAATTGTTGCTCAGATGATATGATTCCTAGCACAACTGGTTCTAACCCTGAAGACATGAACCTTCCATGTGAGGACGATAAACATGATACTAAACGATTGAAGGATGACTCCAATGATTTGGGAAGGAGGTACTTTAGACAGCAGAAATGGAATAATTCAAAAATACATCGACCATGGTTTAGGAGGAATGGATCAAAAGGTAATGGGAACAACTCTAATGGTGAGATGTGCAGTATAGACGTAGATGTACCAAAAGAGTCGAAAGTTACTTGTTTTTCGGAGGATGCAATCTGTAGAGATGAGAAAGATGGCAATAATATTTATTAG 5946 0.4174 MGSCGESAIDDDSLGGSVVEKHMCSEIPVQLVSVQKSCSEEARNVLDSNVDLSDMADGCIGEGYEGSASFVDVTEGSRDVLANECENADVSRLEKTAEDDCQNCLGICCEDSEVSCLKGGGFSSEGNFQDEGTTATNSLQKHCAQQGEQKDDRSNILLSAGDGSGVMEGKNDDTGLLADAFNCALDSRHSEMSSEPEYMADLLVDCNPQNEPEEIMRNADTLSKVEEKCNALDGMEADACRKMSPSQGMEVLSGALCTDTEVKSTSDELCDQKEGEDWNSTCEEKAKAVIDKEITIDSDVQVSFSQGCHRTLGSLPVVDSVCEPTLLDPGNEMKNGILQIEDNFCKLKDCSAEGPANSTFNKPFYPESGHPSVVLITNSSSKDVPDLLSNGDDVSINNNSAVDNSGQTNNDGKEAVEVDCITESIQLPSQRNSRRTKFGCKTQTKKASRKCKNKAGVTHPGGGMKINLEASRKKRSCLSKPARSSIWGLLGNIKQFFPQDNKIEVSEAMCRELGKARSKRQGGKAIKNSANSSSLNSVQKYSVSTSTTRVRLKIKFGKEIDLSSSNVLIPEAVGGLASASYLGSDLGSQKVASNAEDRISEVVALGNLESFKTDLDKDGLVLNGQIANCHLQNTEITEKSDGDTEEPCLEVPPQKEVEALHKPMNDKAMDPGTSPDSEVINSVPEVQVGERHEEDVHHAVLGSSKEFNSNLDVIISERGKKKDKLICSGNYITEDGSQGPTGKNRAKQSKNRRRKKNCSDAVSSMELPTSTEISKSVNSKELSTESLPLSGVIEFGGSTEALKDKSHMEVETTCKPSVDHGFSEYQGSENLLCSARSLGRKLPKSLQPSKVSKAKPKASDSMSRKKTSSRRKEKQKKPISKSEVKGKGVSLKVKCEVEDHPHPAAGVVGNHKVDAVGKNNASDNRVSVNVSNLDMLPGVGLGEQHLSPRNAWVRCDDCHKWRRIQAVLADRIDETNCNWTCKDSSDKEFADCSIPQEKSNAEINAELGLSDASGEEDVYEDSKNYKELGYRRPFVSQESTFTRIFTNEFLHRSRKTQTIDEIMVCHCKPPQEGRLGCGDECLNRMLNIECVQGTCPCGDCCSNQQFQKRKYASLKWFKCGKKGYGLKAVEDVAKGQFLIEYVGEVLDMQAYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRDIKKGEELTFDYNYVRVFGAAAKKCYCGSPHCRGYIGGGDPLNAELIVQGDSDEEFPEPVMLNRDGDIEDSVPIPEYFDNVDTLSSKYLLKDRDVLDKSTTATDANGSPEKESSMNPASAVSLLHSSVEVNDSKGKLPSSIRTEEISLQMEDITSKRMAADQQRYAMESESADKTSSLTTVSKVLSNSTGSDKESKSEIIEGRSDFSLPHLHVKTPKLNNSVKKGKVRANPADGLKAEVTANRLQVSSIKNKKVEGSSNGRFEAVQEKLNELLDGDGGISKRKDATKGYLKLLLLTVASGDRSNGEAIQSNRDLSMILDALLKTKSRAVLNDIINKNGLQMLHNIMKQYRQDFKKIPILRKLLKVLEYLAASKILTSEHINGGPPCHGMESFRESMLSLTEHDDKQVHQIARSFRDRWIPRPVRKHGYMDRDDNRVESHRSFNCNRFSASHNHRHEQDSRPTEAIDCGQQSMVVTTSVDAATPEGCSTLSIDRVEIKGTKKRKRKSRWDQPAETNSHSDAVISSTDESQNIHEDVPPGFSCPIRSLNASLNSGDPALQNASHSGCPSDLVIGHPKEKFNSRLPVSYGIPWSVVQQYGTPHAEITGCWVTAPGMPFNPFPPLPPYPRDDKDCQPSNTTNAMTIDKPAEVQQCDTSGLVNCCSDDMIPSTTGSNPEDMNLPCEDDKHDTKRLKDDSNDLGRRYFRQQKWNNSKIHRPWFRRNGSKGNGNNSNGEMCSIDVDVPKESKVTCFSEDAICRDEKDGNNIY. 1982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02284 1981 ProSiteProfiles AWS domain profile. 1060 1110 IPR006560 GO:0005634|GO:0042054
Seca3g02284 1981 Pfam CW-type Zinc Finger 952 998 IPR011124 GO:0008270
Seca3g02284 1981 MobiDBLite consensus disorder prediction 731 783 - -
Seca3g02284 1981 MobiDBLite consensus disorder prediction 1893 1908 - -
Seca3g02284 1981 MobiDBLite consensus disorder prediction 1729 1747 - -
Seca3g02284 1981 MobiDBLite consensus disorder prediction 1316 1335 - -
Seca3g02284 1981 Gene3D - 942 1005 - -
Seca3g02284 1981 ProSiteProfiles Zinc finger CW-type profile. 946 1000 IPR011124 GO:0008270
Seca3g02284 1981 Gene3D SET domain 1006 1261 IPR046341 -
Seca3g02284 1981 Pfam AWS domain 1075 1109 IPR006560 GO:0005634|GO:0042054
Seca3g02284 1981 SUPERFAMILY SET domain 1044 1250 IPR046341 -
Seca3g02284 1981 FunFam Histone-lysine N-methyltransferase 1011 1268 - -
Seca3g02284 1981 MobiDBLite consensus disorder prediction 1714 1754 - -
Seca3g02284 1981 FunFam Histone-lysine N-methyltransferase 944 1005 - -
Seca3g02284 1981 Pfam SET domain 1123 1229 IPR001214 GO:0005515
Seca3g02284 1981 SMART PostSET_3 1237 1253 IPR003616 -
Seca3g02284 1981 MobiDBLite consensus disorder prediction 1884 1908 - -
Seca3g02284 1981 MobiDBLite consensus disorder prediction 762 783 - -
Seca3g02284 1981 MobiDBLite consensus disorder prediction 843 887 - -
Seca3g02284 1981 CDD SET_SETD2 1111 1253 IPR044437 GO:0010452|GO:0046975
Seca3g02284 1981 ProSiteProfiles Post-SET domain profile. 1237 1253 IPR003616 -
Seca3g02284 1981 MobiDBLite consensus disorder prediction 731 745 - -
Seca3g02284 1981 ProSiteProfiles SET domain profile. 1112 1229 IPR001214 GO:0005515
Seca3g02284 1981 MobiDBLite consensus disorder prediction 391 411 - -
Seca3g02284 1981 SMART shorttest3 1060 1111 IPR006560 GO:0005634|GO:0042054
Seca3g02284 1981 PANTHER SET DOMAIN PROTEINS 448 1730 - -
Seca3g02284 1981 SMART set_7 1112 1235 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02284 Seca-Chr3 40474075 40489093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02284 1095 1252 C2H2 Transcription Factor Family AT2G23740 33.702 5.05e-21 99.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca3g02284 SET 7.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02284 - - gmx:100795379 2828.51