Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02262 ATGTCGAACTCTAATCGTCGTTCGTCGTTTTCTTCCTCAACGACGTCGTCTTTAGCCAAGCGCCATGCATCTTCCTCAGAGAACAACGTTGGAGGGAAGGTTTTGGCCGTTCCTACACACTCCGCCAAGAAACGACCTCCTCTCACTAACCTCACCAATCACATTGCTTCCCGCAACTCAGGAGCACCATCTTCTACTTTGGTACCATGTGGAACTAAAGTTGCAAAGACCAAGAAAGAGCCTCAGGCATGCACCATTACTAGCTCAGCAATTTCCGGCAATAAAATACCCACTTTGCCAAATGTTAAATCTACCGCAGTTGTTGTTCCTAAGGTTACTTCATTCCCTGAAAGGAATGAAGATCCTCCATCAGTTGCTACTGTCACTGTTCCTGTTTCAAACAGCATGGATGTTTCCCCTTGTAAATCAGATGGAATGTCGGTTTCTATGGATGAGTCAATGTCTTCTTGTGATTCTTTCAAGAGCCCTGAGATTGAATATTTGGACAACACCGATATTTCAGTAGTGGATTCAATTGAGAGGAAGACATTCAGCAGTCTGAACATCTCTGATACTAAAGAGCCAGCAGGCAATATCTGTAGTAGAGACATTCTTGTTGAGTTGGAAAAAGGGGAGAAAATTGTCAATATAGATAATGATCACATGGATCCCCAGCTCTGTGCATCCTTTGCTTGTGATATCTACAAGCATTTGCGTGCATCTGAGGCAAAGAAAAGACCTGCTAAAGACTTCATGGAGAGAATTCAGAAGGACATTAATGCCAGTATGCGTTCTATATTGATTGATTGGCTCGTGGAGGTGGCTGAAGAGTATAGACTTGTACCTGATACATTGTATTTGACAGTGAACTACATAGATCGGTATCTTTCAGGGAATGTGATGAGTAGGCAAAAGTTACAATTACTTGGTGTTGCCTCCATGATGATTGCCTCAAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTATATTACTGATAACACATACTTCAAAGAAGAGGTTTTGCAGATGGAATCTAATGTCTTGAATTTTCTGAAGTTTGAAATGACAGCCCCAACAATTAAATGTTTCTTAAGAAGATTTGTACGAGCAGCTCAAGGAGTCGACGAGGTCCCTTCAATGCAACTAGAGTGCTTGACAAACTATATTGCAGAATTGTCTCTGTTGGAGTACAATATGCTCTGTTATGCTCCATCACTTATAGCCGCTTCAGCAATTTTCCTGGCCAAATTTATCCTTTTCCCTTCAAGGAAACCATGGAATTCCACATTGCAGCATTACACACTCTACCAGCCTTCTGATTTGTGTGTTTGTGTAAAGGATCTCCATCGCCTTTGTTGCAACAGTCCTAATTCTAATTTGCCTGCAATTAGGGAAAAATACAGTCAGCACAAGTACAAATACGTGGCCAAGAAGTACTGCCCTCCCTCAATACCTCCAGAATTTTTCCAGAATTGA 1488 0.4173 MSNSNRRSSFSSSTTSSLAKRHASSSENNVGGKVLAVPTHSAKKRPPLTNLTNHIASRNSGAPSSTLVPCGTKVAKTKKEPQACTITSSAISGNKIPTLPNVKSTAVVVPKVTSFPERNEDPPSVATVTVPVSNSMDVSPCKSDGMSVSMDESMSSCDSFKSPEIEYLDNTDISVVDSIERKTFSSLNISDTKEPAGNICSRDILVELEKGEKIVNIDNDHMDPQLCASFACDIYKHLRASEAKKRPAKDFMERIQKDINASMRSILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNVMSRQKLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESNVLNFLKFEMTAPTIKCFLRRFVRAAQGVDEVPSMQLECLTNYIAELSLLEYNMLCYAPSLIAASAIFLAKFILFPSRKPWNSTLQHYTLYQPSDLCVCVKDLHRLCCNSPNSNLPAIREKYSQHKYKYVAKKYCPPSIPPEFFQN. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02262 495 MobiDBLite consensus disorder prediction 1 32 - -
Seca3g02262 495 MobiDBLite consensus disorder prediction 45 68 - -
Seca3g02262 495 FunFam Mitotic cyclin 6 247 347 - -
Seca3g02262 495 FunFam Cyclin A1 349 481 - -
Seca3g02262 495 ProSitePatterns Cyclins signature. 264 295 IPR006671 -
Seca3g02262 495 Pfam Cyclin, C-terminal domain 362 481 IPR004367 -
Seca3g02262 495 CDD CYCLIN_AtCycA_like_rpt1 223 358 - -
Seca3g02262 495 CDD CYCLIN_AtCycA-like_rpt2 362 476 - -
Seca3g02262 495 SUPERFAMILY Cyclin-like 223 359 IPR036915 -
Seca3g02262 495 SMART cyclin_7 366 454 IPR013763 -
Seca3g02262 495 SMART cyclin_7 269 353 IPR013763 -
Seca3g02262 495 MobiDBLite consensus disorder prediction 1 68 - -
Seca3g02262 495 Pfam Cyclin, N-terminal domain 233 359 IPR006671 -
Seca3g02262 495 PIRSF Cyclin_A_B_D_E 4 491 IPR046965 GO:0016538|GO:0044772
Seca3g02262 495 PANTHER CYCLINS 179 473 IPR039361 -
Seca3g02262 495 SUPERFAMILY Cyclin-like 362 487 IPR036915 -
Seca3g02262 495 Gene3D - 247 360 - -
Seca3g02262 495 Gene3D - 233 481 - -
Seca3g02262 495 SMART Cyclin_C_2 362 485 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02262 Seca-Chr3 40140542 40144600 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02262 1 495 Core Cell Cycle Gene Families AT1G44110 63.273 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02262 K06627 - gmx:100789565 762.681