Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02260 ATGTTTACGCGAAGCCGGCGTTTCCCTTCGCCCTCTGAGAAGAGATCATCTGTTTCAGAAAATTCAAGCAAGAAGGTCAATGCCGTGAAGACCCATTTGAAAATGAAGCGTCCCGCTCTCACTGACGTATCCAATAACAGAAATGCCTCCATTTCAAGGACCTCTGTTGGTGCTCCATCAAAGCCTATGGCTCCATGCATGTCCAAAACTGCTAGTGCTAAGACAAAGAAGGATTCTATTGCCAGTACGCAGAAAAAAGTTATTCCTGGGAACACTGCAAGCCTAAAATCAAGTGGATTGGTACTTTCCAAAGACGCATGCTCTACCAGAACTAATCAACCTAAAACTGGGGTTGAAACCTTCCTTGCTCCAAGCACCGATAGCACTGTTTGTCCTGATTTCAATAGTGGGGTTTGTGCTCCGAGATGGATGAGCACTTCTTTAAGTAAATTGCTCAGCGGTTCAGTTTCATTGGATGAGAGCATGTCTACCAGTGATTCTCTGATGAGTCCGGAATTTGAATATGTCGACAATGATGATGCCATATCTATCAAATCAATTGAAAATAGGACTTGTAGCATTCTCAATATTTCAGACTCTTTAACAGTAGAAGGGAAAATATTTGGGAGTGATACTATCATGAAGACAGAAGCAAATGAAGTCGTGGATATTGACTACAATATCAAGGACCCACAGTTCTGTGCATCCATTGCCCATGAAATCTATGAATATTTGCGTGTATCTGAGGAAATTAAAAGGCCGTCTATGGCCTTTATGGAGAAGATACAGAAAGACCTCAATGCTAGCATGCGGGCAACACTTGTTGATTGGCTTGTGGAGGTTGCCGAAGAGTACAGGCTTCTACCTGATACGCTATTTTTGACAGTTAACTACATTGATCGCTATCTTTCTGGCAAAGCAATGAATAGGCAGCGATTACAACTACTAGGTGTTGCTTGCATGATGATTGCTGCCAAATACGAGGAGATCTGTGCCCCTAAGGTGGAAGAGTTCTGTTACGTAACTGATAATACATATTCTAGGGAGCAGGTATTGCAGATGGAATCTGCCGTGCTGAGTTTCTTGAAGTTTGAAATGACCGCTCCTACAACTAGATGTTTTTTAAGGCGCTTCATTATTGTTGCCCAACAAACCTGTGAGGTTCCATTGATGCAGTTGGAGTATTTGGCAGACTATCTCGTAGAGTTATCTCTTCTAGAGTATGGCATGCTCAAGTACACCCCGTCCATAGTAGCTGCATCAGCCACTTTCTTGGCTATATACATACTACTTCCTAGGAAGAAACCTTGGAATTCTATGCTAAGACATTACACAGGTTACCAAGCATTTGAATTGCGTGGATGTGTCAAGGGATTGCAGTGGTTGTACTGTTTTGGCTGTCATAATTTACCTGCCATCAGGGAGAAATACAATCAGCATAAGATGAGAATACCCTGGTCATGCTACTTGTGTATGTGTGTGGTAAAATTGGGTGACATAAAGCAGTCTACAATCACATTCCTTGGTTTTTGGCATTTTCTGCACCTTGTCTATGATTTTTGA 1563 0.4216 MFTRSRRFPSPSEKRSSVSENSSKKVNAVKTHLKMKRPALTDVSNNRNASISRTSVGAPSKPMAPCMSKTASAKTKKDSIASTQKKVIPGNTASLKSSGLVLSKDACSTRTNQPKTGVETFLAPSTDSTVCPDFNSGVCAPRWMSTSLSKLLSGSVSLDESMSTSDSLMSPEFEYVDNDDAISIKSIENRTCSILNISDSLTVEGKIFGSDTIMKTEANEVVDIDYNIKDPQFCASIAHEIYEYLRVSEEIKRPSMAFMEKIQKDLNASMRATLVDWLVEVAEEYRLLPDTLFLTVNYIDRYLSGKAMNRQRLQLLGVACMMIAAKYEEICAPKVEEFCYVTDNTYSREQVLQMESAVLSFLKFEMTAPTTRCFLRRFIIVAQQTCEVPLMQLEYLADYLVELSLLEYGMLKYTPSIVAASATFLAIYILLPRKKPWNSMLRHYTGYQAFELRGCVKGLQWLYCFGCHNLPAIREKYNQHKMRIPWSCYLCMCVVKLGDIKQSTITFLGFWHFLHLVYDF. 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02260 520 PANTHER CYCLINS 177 479 IPR039361 -
Seca3g02260 520 FunFam Mitotic cyclin 6 254 354 - -
Seca3g02260 520 MobiDBLite consensus disorder prediction 41 57 - -
Seca3g02260 520 Gene3D - 240 482 - -
Seca3g02260 520 Gene3D - 254 367 - -
Seca3g02260 520 MobiDBLite consensus disorder prediction 14 28 - -
Seca3g02260 520 SUPERFAMILY Cyclin-like 369 482 IPR036915 -
Seca3g02260 520 PIRSF Cyclin_A_B_D_E 2 484 IPR046965 GO:0016538|GO:0044772
Seca3g02260 520 Pfam Cyclin, N-terminal domain 240 366 IPR006671 -
Seca3g02260 520 Pfam Cyclin, C-terminal domain 369 482 IPR004367 -
Seca3g02260 520 SMART cyclin_7 276 360 IPR013763 -
Seca3g02260 520 SMART cyclin_7 373 461 IPR013763 -
Seca3g02260 520 SMART Cyclin_C_2 369 489 IPR004367 -
Seca3g02260 520 ProSitePatterns Cyclins signature. 271 302 IPR006671 -
Seca3g02260 520 MobiDBLite consensus disorder prediction 1 82 - -
Seca3g02260 520 FunFam Cyclin A1 357 484 - -
Seca3g02260 520 SUPERFAMILY Cyclin-like 229 366 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02260 Seca-Chr3 40123314 40127987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02260 40 483 Core Cell Cycle Gene Families AT1G44110 51.429 2.42e-148 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02260 K06627 - cave:132184255 509.605