Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02258 ATGGCGCCAATCCTGCAGAGCTCTCAGCCATGGGTCGAGAAATACCGGCCAAAGCAAGTGAAAGACGTTGCTCACCAAGACGAAGTCGTTCGAGTGCTCACAAACACCCTTGAAACCGGAAGCTGCCCCCACATGCTCTTCTACGGTCCTCCAGGCACCGGAAAAACCACCACTGCCCTCGCAATCGCCCATCAACTTTTCGGGCCTGAGCTCTATAAGTCTAGGGTGCTGGAGTTGAATGCTAGTGATGACCGTGGGATTAATGTGGTTCGTACAAAGATAAAAGATTTTGCTGCTGTGGCTGTTGGTACTAATCAGCGTAAGAATGGTTATCCTTGTCCACCATATAAGATTATTGTTCTAGATGAGGCAGATTCAATGACGGAAGATGCTCAGAATGCCCTGAGGCGTACAATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTACATTAGCAGGATTATAGAACCACTTGCCTCAAGGTGTGCAAAATTCAGGTTCAAGCCATTGTCAGAAGAAATCATGAGCAGTCGAATATCATACATTTGCAAAGAAGAAGGAATCTATCTTGATGCTGAGGGTCTTTCTACCCTGAGTTCTATTTCTCAAGGAGATCTTCGTCGGGCTATCACATACTTGCAGTCTGCTGCTCGCTTATTTGGATCTTCCATTTCTTCAAAGGACCTGATTTCTGTGTCTGGGGTTGTTCCACCAAATGTTGTGGAAGAACTTCTTAAAGCATGCAAAAGTGGTAATTTTGATTTGGCCAACAAGGAAGTCAACAATTTCATTGCAGAGGGATATCCAGCCTCTCAGATGCTAACTCAGTTATTTGAGGCCATTGTTGAAGAAAATGACATATCAGATGAACAGAAGGCAAGAATATGCAAGAAGCTGGGTGAAGCAGATAAGTGCCTAGTTGATGGTGCTGATGAATACTTGCAGCTTCTTGGAGTGGTCAGCAATACAATGCAAGCTTTTTGTAACATGCCAGAAGGATTTGCTTTCGAGGGTTAA 1029 0.4402 MAPILQSSQPWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKNGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRISYICKEEGIYLDAEGLSTLSSISQGDLRRAITYLQSAARLFGSSISSKDLISVSGVVPPNVVEELLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDISDEQKARICKKLGEADKCLVDGADEYLQLLGVVSNTMQAFCNMPEGFAFEG. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02258 342 FunFam Replication factor C subunit 4 240 329 - -
Seca3g02258 342 SMART AAA_5 41 174 IPR003593 GO:0016887
Seca3g02258 342 SUPERFAMILY post-AAA+ oligomerization domain-like 240 325 IPR008921 GO:0003677|GO:0006260
Seca3g02258 342 Pfam Replication factor C C-terminal domain 240 325 IPR013748 -
Seca3g02258 342 Gene3D - 240 329 - -
Seca3g02258 342 Gene3D - 176 239 - -
Seca3g02258 342 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 9 321 - -
Seca3g02258 342 CDD HLD_clamp_RFC 174 233 - -
Seca3g02258 342 CDD AAA 26 166 - -
Seca3g02258 342 FunFam Replication factor C subunit 4 176 239 - -
Seca3g02258 342 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Seca3g02258 342 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Seca3g02258 342 FunFam Replication factor C subunit 5 3 174 - -
Seca3g02258 342 Gene3D - 3 173 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02258 Seca-Chr3 40100269 40107122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02258 1 338 Core DNA Replication Machinery Family AT1G21690 78.466 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02258 K10755 - gmx:100798331 623.624