Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02256 ATGGAAACTGATCTGCAAGCTGGAGCTAACCACAGATATGAGCTGCTGTGGTTGGTACTTATTGGACTGGTATTTGCGCTTATAATTCAGTCATTGGCTGCAAATCTTGGCGTAACCACCGGCAAACACCTTTCAGAAGTATGTAAAGTTGAGTACCCATTATTTGTTAAGTACGGCTTATGGTTATTAGCAGAGGTTGCTGTGATAGCTGCAGACATACCTGAAGTGATTGGTACAGCCTTTGCGCTTAACATACTCTTCCACATCCCACTATGGGTAGGAGTTCTATTGACTGGTTGTAGCACCCTCTTGCTTCTGAGCCTGCAGAGATTTGGGGTGAGGAAGTTGGAACTACTGATATCGACTCTAGTTTTTGTAATGGCTGCATGTTTCTTTGCGGAAATGAGCTATGTACATCTCCCATTGTCTGAAGTATTAAAGGGAATGTTTGTTCCCAAACTCAACGGGGAAGGAGCTGTAGGCGATGCTATTGCTCTTTTGGGTGCCCTTATCATGCCGCACAATCTTTTCCTTCATTCTGCTCTCGTGTTGTCTAGAAAAGTGCCCAGTTCCATGAATGGTATCAATGATGCATGTAGATACTTTCTCATAGAGAGTGGGTTCGCACTATTTGTAGCATTTCTAATCAATGTGGGAATAGTTTCTGTGTCGGGCACTGTTTGCTCTACCAGTAACCTTTCTGCAGAAAATACTGATCATTGCAAAGATCTTACCCTTAACTCTGCTTCTTTCCTTCTCAAGAATGTGTTGGGACGATCTAGCTCAACCATTTATGCCATAGCACTACTAGCCTCAGGACAAAGTTCTACAATTACTGGAACCTATGCAGGGCAGTACGTCATGCAGGGTTTCTTGGACATAAAGATGAAAAGATGGAAAAGGAACTTGATGACTAGGTGCATTGCCATAGCACCTAGTCTAATTGTTTCCATCATTGGTGGTTCTTCGGGGTCTAGTCGACTTATTATTATAGCATCGTACATGCACCCTATTAAAATTGCTTTGCAGATGATACTTTCTTTTGAGCTTCCATTTGCTTTAATTCCACTCCTTAAGTTTAGCAGCAGTAGTACCAAGATGGGACCTTACAAGAATTCTTTGATTATCATTATCATATCATGGATACTAGGCTTTGGGATCATCGGTATCAATGTGTACTACCTCAGCACTGCCTTTGTGAGTTGGCTAATTCATAACAATCTACCAAAAGTGGCAAATGTGTTCATTGGGATTATAGTGTTTCCTTTAATGACAATGTATATTATCTCTGTTATCTACCTAACCTTTAGAAAAGACTCTGTTAAGATATTTGTAGAGATGAAGAATGACCCGGTAATGCAAACTCATATGGAAAAGGGGATTCTGGAAAATGGTCAATTAGAGTTGAGTCATGCTCATTACAGAGAAGACTTAGCTGATATTCCACTACCGGAATGA 1458 0.4095 METDLQAGANHRYELLWLVLIGLVFALIIQSLAANLGVTTGKHLSEVCKVEYPLFVKYGLWLLAEVAVIAADIPEVIGTAFALNILFHIPLWVGVLLTGCSTLLLLSLQRFGVRKLELLISTLVFVMAACFFAEMSYVHLPLSEVLKGMFVPKLNGEGAVGDAIALLGALIMPHNLFLHSALVLSRKVPSSMNGINDACRYFLIESGFALFVAFLINVGIVSVSGTVCSTSNLSAENTDHCKDLTLNSASFLLKNVLGRSSSTIYAIALLASGQSSTITGTYAGQYVMQGFLDIKMKRWKRNLMTRCIAIAPSLIVSIIGGSSGSSRLIIIASYMHPIKIALQMILSFELPFALIPLLKFSSSSTKMGPYKNSLIIIIISWILGFGIIGINVYYLSTAFVSWLIHNNLPKVANVFIGIIVFPLMTMYIISVIYLTFRKDSVKIFVEMKNDPVMQTHMEKGILENGQLELSHAHYREDLADIPLPE. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02256 485 Hamap Divalent metal cation transporter MntH [mntH]. 1 399 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02256 485 Pfam Natural resistance-associated macrophage protein 2 373 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02256 485 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 2 365 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02256 485 PRINTS Natural resistance-associated macrophage protein signature 163 186 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02256 485 PRINTS Natural resistance-associated macrophage protein signature 88 107 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02256 485 PRINTS Natural resistance-associated macrophage protein signature 60 86 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02256 485 PRINTS Natural resistance-associated macrophage protein signature 273 292 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02256 485 PRINTS Natural resistance-associated macrophage protein signature 113 134 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02256 485 PRINTS Natural resistance-associated macrophage protein signature 301 318 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02256 485 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 2 443 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02256 485 NCBIfam Nramp family divalent metal transporter 5 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02256 Seca-Chr3 40000430 40007761 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02256 2 485 Inorganic Solute Cotransporters AT1G15960 58.471 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02256 K21398 - gmx:100787785 762.296