Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02254 ATGGCAAGCCTGCAACAACAAGCTGAGAGTGATGCAGCATCGAGGCCGATTGGAGGTAGCAACCGCATAGTAGCCCTCAATGTCACCCCTTCTAATAATAATTACGACTATGATCATGATGCCTCCTCAAAGCACAATCAAGAGAAACCTGGGTGGAGAAAGTTCTTGTCATATGTAGGTCCCGGTTTCCTCGTCTCCTTGGCTTATCTTGATCCTGGAAACATGGAAACTGATCTGCAAGCTGGAGCTGACCATAGATATGAGCTGCTGTGGGTGATACTGATTGGACTGGTGTTTGCGCTTATAATTCAGTCATTGGCTGCAAATCTCGGCGTATGTACTGGCAAGCACCTTTCAGAAATATGTAAAGCTGAGTACCCATTATTTGTGAAGTACTGCTTATGGTTATTAGCAGAGCTTGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCACAGCCTTTGCCCTTAACATACTCTTCCATATCCCAGTATGGGCAGGAGTCCTGTTGACTGGCTTCAGCACTCTCTTGTTTCTGGGTCTGCAGAGATTTGGGGTACGAAAGTTGGAACTACTAATATCAATCCTTGTTTTTGTAATGGCTGGATGTTTCTTTGGGGAAATGAGCTATGTAAAACCACCTGCTTCTGATGTATTAAAAGGAATGTTTGTACCTAAACTCAGTGGTCATGGAGCTGTAGGAGATGCTATTGCCCTTTTGGGTGCCCTTGTCATGCCGCACAATCTTTTCCTCCACTCTGCTCTGGTATTGTCTAGAAAAGTACCTGGTTCCGTGCGTGGCATCAATGATGCATGTAGATTCTTTCTCATTGAAAGTGGGTTTGCGTTGTTTGTGGCATTTCTAATCAATGTTGCAATGGTTTCTGTGTCGGGAACTGTTTGCTCAGCCAACAACCTTTCAACAGAAAATAATGATCGTTGCAGTGATCTTACCCTTAACTCTGCTTCTTTCCTTCTCCAGAATGTGTTAGGACGATCAAGCTCAACCATTTATGCCATAGCACTGCTAGCCTCAGGACAAAGTTCTGCTATCACTGGAACCTATGCAGGGCAATACATCATGCAGGGTTTTTTGGACTTGAAGATGAAAAAATGGATTAGGAATTTGGTGACTAGGTGTATTGCAATAACACCTAGTCTTATTGTCTCTATCATTGGTGGTCCTTCTGGGGCGGGTCGACTTATCATTATTGCATCGATGATACTTTCTTTTGAGCTTCCATTTGCTTTAATTCCACTCCTTAAGTTTAGTAGCAGTAGTACCAAGATGGGACCTCACAAGAATTCCATGATTATCATTGTCTTCTCATGGATATTGGGCTTGGGGATCATCGGAATCAATGTGTACTACCTCATTACTGCCTTTGTGGGTTGGTTAATTCATAGCAGTCTACCAAAGGTGGCAAATGTGTTTATTGGGATCATAGTGTTTCCTCTAATGGCAATTTATATTATCTCAGTTATCTACTTAACCTTCAGAAAAGACACTGTTAAAACATTTATTGAGACAAAGAATGACCCAGCAATACAAACCCATGTGGAAAAAGGGTTTTTGAATGATGGTCAATTACAGTTGAATCAAGCACCTTACAGAGAAGATTTAGCTGATATCCCACTACCACAATAA 1650 0.4224 MASLQQQAESDAASRPIGGSNRIVALNVTPSNNNYDYDHDASSKHNQEKPGWRKFLSYVGPGFLVSLAYLDPGNMETDLQAGADHRYELLWVILIGLVFALIIQSLAANLGVCTGKHLSEICKAEYPLFVKYCLWLLAELAVIAADIPEVIGTAFALNILFHIPVWAGVLLTGFSTLLFLGLQRFGVRKLELLISILVFVMAGCFFGEMSYVKPPASDVLKGMFVPKLSGHGAVGDAIALLGALVMPHNLFLHSALVLSRKVPGSVRGINDACRFFLIESGFALFVAFLINVAMVSVSGTVCSANNLSTENNDRCSDLTLNSASFLLQNVLGRSSSTIYAIALLASGQSSAITGTYAGQYIMQGFLDLKMKKWIRNLVTRCIAITPSLIVSIIGGPSGAGRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIIVFSWILGLGIIGINVYYLITAFVGWLIHSSLPKVANVFIGIIVFPLMAIYIISVIYLTFRKDTVKTFIETKNDPAIQTHVEKGFLNDGQLQLNQAPYREDLADIPLPQ. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02254 549 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 41 507 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02254 549 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 53 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02254 549 Hamap Divalent metal cation transporter MntH [mntH]. 30 463 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02254 549 NCBIfam Nramp family divalent metal transporter 60 426 - -
Seca3g02254 549 Pfam Natural resistance-associated macrophage protein 76 437 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02254 549 PRINTS Natural resistance-associated macrophage protein signature 187 208 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02254 549 PRINTS Natural resistance-associated macrophage protein signature 134 160 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02254 549 PRINTS Natural resistance-associated macrophage protein signature 237 260 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02254 549 PRINTS Natural resistance-associated macrophage protein signature 347 366 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02254 549 PRINTS Natural resistance-associated macrophage protein signature 407 426 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02254 549 PRINTS Natural resistance-associated macrophage protein signature 162 181 IPR001046 GO:0016020|GO:0030001|GO:0046873
Seca3g02254 549 PRINTS Natural resistance-associated macrophage protein signature 375 392 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02254 Seca-Chr3 39959036 39963367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02254 13 549 Inorganic Solute Cotransporters AT1G15960 58.845 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02254 K21398 - gmx:100787785 936.406