Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02234 ATGACAGATTATTGCATGCCAGGGATGAGTGGCTATGATTTACTTAAAAGAGTCAAGGTCAGAACATTAACCCTTATTCCCCCGACATCTTCCCGAAATTCCCTGCAGGGATCTTCCTGGAAAGATGTTCCAGTTGTGATTATGTCATCAGAAAATGTACCTTCCAGAATCAGCATGTGCTTGGAAGGAGGAGCAGAGAAGTTTCTATTGAAGCCTCTACAATTATCGGATTTGGAGAAGCTTCAGCCTTACTTTTCCAAATCCCTTGATAATTCTTGTGATGAAGAACATGCTAACAGTTCCATAGATTCAGACAATGACAATCTCATCAACAACAATAACGGTAATAATAGCAGTAATAGTAATAGCAAAAGGAAAGCCATGTCTCCTGAGCCTCCAGAGAGATCAAAACCCAAACTGAAAGGGTTGGCAGTGGTATAA 441 0.4059 MTDYCMPGMSGYDLLKRVKVRTLTLIPPTSSRNSLQGSSWKDVPVVIMSSENVPSRISMCLEGGAEKFLLKPLQLSDLEKLQPYFSKSLDNSCDEEHANSSIDSDNDNLINNNNGNNSSNSNSKRKAMSPEPPERSKPKLKGLAVV. 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02234 146 MobiDBLite consensus disorder prediction 103 127 - -
Seca3g02234 146 SUPERFAMILY CheY-like 2 80 IPR011006 -
Seca3g02234 146 Gene3D - 1 113 - -
Seca3g02234 146 ProSiteProfiles Response regulatory domain profile. 1 86 IPR001789 GO:0000160
Seca3g02234 146 MobiDBLite consensus disorder prediction 89 146 - -
Seca3g02234 146 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 127 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02234 Seca-Chr3 39682231 39683626 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02234 1 101 Response Regulator Gene Family AT3G57040 52.941 1.85e-30 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g02234 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02234 K14492 - gmx:100801334 170.244