Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02229 ATGTCGTGTGAGGAGTCACAGAAAAAGATGGTGTTTGACGCGGAAACGGCGTCGTCGTTGGTGAAGGAACTGAGGAGCAGTTTCGCTTCTGGCACGACGCGAAGTTATGAATGGAGAGTGTCGCAAGTGAAAGCCCTTTTGAAGATGGTAACTGAAAATGAAGAGCAGATCATCGATGCTCTTCGTTCAGACCTCGAAAGGCCTCCACTGGAAACTGTAGTCTATGAGATTGGTATGTTTAAAAACTCATGTGAAGTCACACTGAAGGAATTGAAACATTGGATGATGCCAGAAAAGGTTAAAACTTCAATCACAACTTTTCCCTCTTCAGCTGAAATAGTACCTGAACCGCTGGGTGTGGTGTTAGTCATCTCTGCATGGAACTATCCATTCTGTATGTTAACATTGTTGTCTCTTGATCCAGTTGTTGGAGCTATAGCAGCTGGTAATGTTGTGGTTCTAAAGCCTTCAGAAATTGCTCCAGCCTCATCTTCACTGCTGGCAAAATTGATAGGGAAGTACATGGATAACTCATCTGTAAGAGTAGTAGAGGGGGCAGTTGATGAAACAACCGCACTATTGCAGCAAAAGTGGGACAAAATTTTCTATACAGGTAATGGAAGAGTGGGACGTATAGTGATGGCTGCTGCTGCAAAACATCTTACACCAGTTGTTCTGGAGCTTGGAGGAAAATCTCCAGTTGTTGTTGATTCAAATATCAATTTACAGGTAGCAGCTAGAAGGATTATTTCAGGCAAGTGGGGGTGTAACAATGGACAAGCCTGCATTTCTCCAGATTATGTTATAACAACAAAAGACAATGCTCCCAAGTTGGTGGATGCCCTAAAGATTGAATTGGAGAATTGTTATGGGAAGAACCCGATGGAATCAAAAGATTTGTCCCGCATTGTGAATTCCAATCACTTTGCTCGCTTGACAAAGTTATTGGATGATGATAAGGTTGCTGGCAAGATTGTTCATGGAGGTGAAAGGGATGAAAGCAAATTGAAGATTGCTCCAACTATTTTATTGGATGTTCCACGAGATTCTCTGATAATGGGAGAGGAGATCTTTGGTCCATTGCTTCCCATCATCACGGTCAATAAACTGGAGGAAAGCTTCGATGTGATCAATTCAGGAACAAAGCCTCTCGCTGCATATTTATTTACAAACGATGAGAAGTTCAAGGAGCGGTTTGTAATGACTGTTTCTGCTGGGGGTTTGCTTGTCAATGACACTGTCTTACATCTTGTGGTTCATACTTTGCCATTTGGGGGAGTTGGGGAGAGTGGAATGGGTGCATACCATGGGAAATTCTCCTTTGATGCTTTTACTCACAAAAAGGCAGTTCTTTATCGAAGTTTTATGGGTGATGCATCAATAAGGTACCCACCATACACGGATACAAAGCAGAGATTGATGAGGGCTCTCGTTGGTGGTGATATTCCTGGCATAACTCGTGCTCTCTTTGGTTGGTCTTAG 1482 0.4285 MSCEESQKKMVFDAETASSLVKELRSSFASGTTRSYEWRVSQVKALLKMVTENEEQIIDALRSDLERPPLETVVYEIGMFKNSCEVTLKELKHWMMPEKVKTSITTFPSSAEIVPEPLGVVLVISAWNYPFCMLTLLSLDPVVGAIAAGNVVVLKPSEIAPASSSLLAKLIGKYMDNSSVRVVEGAVDETTALLQQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSNINLQVAARRIISGKWGCNNGQACISPDYVITTKDNAPKLVDALKIELENCYGKNPMESKDLSRIVNSNHFARLTKLLDDDKVAGKIVHGGERDESKLKIAPTILLDVPRDSLIMGEEIFGPLLPIITVNKLEESFDVINSGTKPLAAYLFTNDEKFKERFVMTVSAGGLLVNDTVLHLVVHTLPFGGVGESGMGAYHGKFSFDAFTHKKAVLYRSFMGDASIRYPPYTDTKQRLMRALVGGDIPGITRALFGWS. 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02229 493 CDD ALDH_F3FHI 17 452 - -
Seca3g02229 493 PANTHER ALDEHYDE DEHYDROGENASE 16 482 IPR012394 GO:0006081
Seca3g02229 493 PIRSF ALDH 4 487 IPR012394 GO:0006081
Seca3g02229 493 FunFam Aldehyde dehydrogenase 25 233 - -
Seca3g02229 493 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 226 233 IPR029510 GO:0016491
Seca3g02229 493 Pfam Aldehyde dehydrogenase family 13 450 IPR015590 GO:0016491
Seca3g02229 493 SUPERFAMILY ALDH-like 20 463 IPR016161 GO:0016491
Seca3g02229 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 25 448 IPR016162 GO:0016491
Seca3g02229 493 FunFam Aldehyde dehydrogenase 230 430 - -
Seca3g02229 493 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 230 430 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02229 Seca-Chr3 39490392 39495589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02229 77 491 Aldehyde Dehydrogenase Gene Family AT1G44170 72.048 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02229 K00128 - gmx:100783726 830.476