Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02221 ATGGCGGAGACGATCTCTCCTATGGACATCGACGCCGACGACCAAACTTACTCTGCGAGGCCTGATAAGGGCAAAAGTGTCCTCGTCGCCGGTAACCCTCCCGGCGGCGCCAAGGCGATTCCTTGGGTCGAAAAGTACCGTCCTCAGTCCCTCGACGACGTCGCCGCTCACCGTGACATTGTCGATACCATTGATAGGCTGACCACTGAGAACAGATTACCCCATCTTCTATTGTATGGCCCTCCTGGCACGGGCAAAACATCAACTATTCTCGCTGTGGCACGCAAATTATATGGTGCACAATACCACAATATGATTTTGGAGCTCAATGCTTCGGATGATAGAGGAATTGATGTTGTACGACAGCAGATTCAAGATTTTGCTAGCACTCAGAGCTTATCATTTGGTAAGTCCTCTGTAAAACTGGTCTTGTTAGATGAAGCTGATGCCATGACAAAGGATGCCCAATTTGCATTACGTAGAGTGATTGAGAAATATACAAAAAGCACCAGGTTTGCACTTATCTGTAATCATGTAAACAAGATTATTCCAGCACTTCAATCAAGATGCACTCGGTTTCGGTTTGCCCCTCTTGATGTTGTACATGTCACTGAAAGATTGAAACATGTTATTAAGGCTGAAGGGCTTGATGTTGAAGATAGTGGCTTAGCAGCTCTTGTTCGGCTTAGCAATGGTGATATGAGAAAGGCTCTGAATATTCTTCAGTTAGTTGCTTTAATATTTGTGCAGTCAACCCATATGGCCTCTCAGCAGATAACAGAAGAAGCTGTTTACCTGTGCACCGGAAATCCATTGCCCAAAGACATTGAGCAAATATCTTACTGGCTTCTTAATGAACAATTTGCAGATAGCTTTAAAAGAATATATGAAATCAAGACAAGGAAAGGATTGGCCGTGGTAGATATTGTCAGAGAAGTGACAATGTTTGTTTTTAAGATTAAGATGCCTCCAGCTGTTCGGGTACAGTTGATGAATGATTTGGCAGATATAGAGTACAGATTAAGTTTTGGGTGCAACGATAAACTCCAGCTTGGATCAGTCATTGCTTCTTTTACACGCGCTAGATCTGCCCTGGTTGCAGCTACTACCTAA 1113 0.4385 MAETISPMDIDADDQTYSARPDKGKSVLVAGNPPGGAKAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGKSSVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDVVHVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQLVALIFVQSTHMASQQITEEAVYLCTGNPLPKDIEQISYWLLNEQFADSFKRIYEIKTRKGLAVVDIVREVTMFVFKIKMPPAVRVQLMNDLADIEYRLSFGCNDKLQLGSVIASFTRARSALVAATT. 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02221 370 CDD AAA 60 197 - -
Seca3g02221 370 Gene3D - 36 197 IPR027417 -
Seca3g02221 370 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 41 352 - -
Seca3g02221 370 Gene3D - 271 368 - -
Seca3g02221 370 FunFam Replication factor C subunit 5 35 198 - -
Seca3g02221 370 SMART AAA_5 72 201 IPR003593 GO:0016887
Seca3g02221 370 SUPERFAMILY post-AAA+ oligomerization domain-like 271 361 IPR008921 GO:0003677|GO:0006260
Seca3g02221 370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 262 IPR027417 -
Seca3g02221 370 FunFam Replication factor C subunit 5 200 270 - -
Seca3g02221 370 Pfam ATPase family associated with various cellular activities (AAA) 76 195 IPR003959 GO:0005524|GO:0016887
Seca3g02221 370 Gene3D - 201 270 - -
Seca3g02221 370 FunFam Replication factor C subunit 5 271 368 - -
Seca3g02221 370 CDD HLD_clamp_RFC 198 268 - -
Seca3g02221 370 MobiDBLite consensus disorder prediction 1 23 - -
Seca3g02221 370 Pfam Replication factor C C-terminal domain 271 357 IPR013748 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02221 Seca-Chr3 39364777 39370862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02221 1 368 Core DNA Replication Machinery Family AT1G77470 78.261 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02221 K10756 - gmx:100782652 647.506