Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02219 ATGGCATCAGAACTTCAATTGCCACCAGGCTTCAGATTCCATCCAACGGATGAGGAGCTCGTGATGCACTACCTCTGTCGCAAATGCGCATCACAGCCCATAGCCGTTCCAATCATCGCCGAAGTCGACCTCTACAAGTATGATCCTTGGGATCTTCCTGGTCTGGCTTCGTACGGAGAGAAGGAGTGGTACTTCTTTTCACCGCGGGACCGTAAATATCCAAATGGTTCGAGGCCGAATCGGGCGGCTGGGAGTGGTTACTGGAAGGCAACAGGTGCTGATAAGCCCATTGGTCATCCAAAGCCCGTTGGGATCAAGAAAGCATTGGTGTTCTATGCAGGAAAAGCACCTAAAGGGGATAAAACCAACTGGATCATGCACGAGTATCGACTTGCCGATGTAGATCGATCCATTCGCAAAAAGAACAGTTTAAGGCTGGATGACTGGGTGCTTTGCCGGATTTACAATAAGAAGGGCACCGTCGAGAAACAACCAGCCAGCGGTGTTGTTAGCCGGAAAACTGAATCCTCGGAAATCGAAGACATGAAGCCGGAGATTCTGACACGTGGTGGCGGTCTTCCGCCGCCACACCCACCGCAAGCGACGGTGGCGATGACGGATTACATGTACTTTGACAAGTCGGACTCAATCCCGAAGCTGCACACGGACTCGAGCTGCTCGGAACAGGTGGTGTCGCCGGAGTTTGCGAGCGAGGTGCAGAGCGAGCCGAAGTGGAACGAATGGGAAAAGAGCCTTGAATTTCCCTATAATTACATGGATGCCACTCTCAACAACAATAGCTTCGGGGTCCAGAGCAATAATCAGATGTCGCCGTTGCAGGACATGTTCATGTACATGCCCAAGCCCTTCTAA 873 0.5178 MASELQLPPGFRFHPTDEELVMHYLCRKCASQPIAVPIIAEVDLYKYDPWDLPGLASYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGHPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRSIRKKNSLRLDDWVLCRIYNKKGTVEKQPASGVVSRKTESSEIEDMKPEILTRGGGLPPPHPPQATVAMTDYMYFDKSDSIPKLHTDSSCSEQVVSPEFASEVQSEPKWNEWEKSLEFPYNYMDATLNNNSFGVQSNNQMSPLQDMFMYMPKPF. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02219 290 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Seca3g02219 290 FunFam NAC transcription factor 16 161 - -
Seca3g02219 290 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Seca3g02219 290 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Seca3g02219 290 PANTHER NAC TRANSCRIPTION FACTOR 56 7 219 - -
Seca3g02219 290 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02219 Seca-Chr3 39308938 39310866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02219 1 290 NAC Transcription Factor Family AT1G01720 73.000 5.65e-153 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g02219 NAM 1.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02219 - - gmx:100805768 525.013