Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02218 ATGGAACATGAAGAGGGCAAACAATCTTCCCAAAAGAACCCATATGAAGAAGAAAACTTTGATTTGATTCTAGCAATTGGCTTGCGAGAACAAGAGAGAACGTTTGCAATGCTAGAAACGATTGAAAGTGAAAGTGATGAAGATGTAAGTGACTCCTCTTTTGATAATGATGATGACTTTTCAGAGAGCCAAGAGATTGAATCCAACCTTCAGTTTCTTGAAGGTGAAGGAAGCAATGATAATGATGAAGAAATGGACATGGAAGAAGATGACATTGATCCAGATGAATTATCTTATGAAGAGTTGATTGAGTTAGGAGAAGAGAAAAGAGGATTGTCAACAAATGAAATCTCTACCTGTTTATACCCTTACACATGCCAATCTGCAGAAAGTAAAAGTGGAATTGACCGTTGTGTGATTTGTCAGGTTGAATATGAAAAAGGTGAAACCCTGGTGGCACTTAAGTGTGGGCACCCTTATCATTCTGATTGCATTAGCAAGTGGCTTCAGATTAAGAAGGTTTGTCCAATTTGTAACAATGAAGTTTCAACTACCAACATGGCTAAGAACCCTTGA 576 0.3785 MEHEEGKQSSQKNPYEEENFDLILAIGLREQERTFAMLETIESESDEDVSDSSFDNDDDFSESQEIESNLQFLEGEGSNDNDEEMDMEEDDIDPDELSYEELIELGEEKRGLSTNEISTCLYPYTCQSAESKSGIDRCVICQVEYEKGETLVALKCGHPYHSDCISKWLQIKKVCPICNNEVSTTNMAKNP. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02218 191 Pfam Ring finger domain 137 179 IPR001841 -
Seca3g02218 191 ProSiteProfiles Zinc finger RING-type profile. 138 179 IPR001841 -
Seca3g02218 191 FunFam E3 ubiquitin ligase BIG BROTHER-related 104 185 - -
Seca3g02218 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 189 IPR013083 -
Seca3g02218 191 MobiDBLite consensus disorder prediction 77 91 - -
Seca3g02218 191 SMART ring_2 138 178 IPR001841 -
Seca3g02218 191 MobiDBLite consensus disorder prediction 41 64 - -
Seca3g02218 191 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 183 IPR033276 GO:0004842|GO:0016567|GO:0046621
Seca3g02218 191 SUPERFAMILY RING/U-box 137 184 - -
Seca3g02218 191 MobiDBLite consensus disorder prediction 37 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02218 Seca-Chr3 39287580 39288155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02218 79 182 C3H Transcription Factor Family AT3G63530 49.550 2.66e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02218 K19045 - gmx:100526881 256.914