Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02214 ATGACTTCCATGCCATTTGATTTCTCCTGGGAAGTGAATTGTGTCCCCTTGAGCGGAGCCCAATTGGAATATTATCAAAACCTCAAAGAGGAGAATTTTTTTGGAGATTATTTTAACATTGAGGTTCGTGTAGAACATCAACTATGCTTTACCCCATCAAACCCACCACAACAACCCCCTTTAATAGTACCCTTTGATTCGTTTTCATATCGAAGGTCCCTTTTTCTATTTAGCCAAGATTTTCTAGAAGACGGTTCATCATACATACAAAGACATTTTCCTGATCCTATCATTCCCCCTGAGTTAATTCAATCAATGATGCCAGACGTGATAGCATATGCTAAAGATGAGGTCGAGAATCGTTGTTCTGTTTTCCGCACTAAAAGTGGGAAGTTTCATTTATTCAATTTGGTTTTGGATATTAGAATTCAAGATGAACTAGATGATGATATTATCAACATGGTCATGGAGGAGTCCATGAGAGAGACCCAAATGGTTCCTGCATCCAAGATTGCCATTGAATCCCTCCAGAAAGTGAAGCTACAAGAAGGTGCTACCATGGAGAGATGTAGTATTTGTCTAATGGAGTTCGATGTTGGCACAGAGGTTTCATCAATGCCTTGCAAGCATGTTTATCACCATGAATGCCTTGTTCAGTGGCTTAAAACGAGTCATGTGTGTCCTTTGTGTCGCTATCCCATGCCTACTTCAATAAGTGTGATTGATTAA 729 0.3964 MTSMPFDFSWEVNCVPLSGAQLEYYQNLKEENFFGDYFNIEVRVEHQLCFTPSNPPQQPPLIVPFDSFSYRRSLFLFSQDFLEDGSSYIQRHFPDPIIPPELIQSMMPDVIAYAKDEVENRCSVFRTKSGKFHLFNLVLDIRIQDELDDDIINMVMEESMRETQMVPASKIAIESLQKVKLQEGATMERCSICLMEFDVGTEVSSMPCKHVYHHECLVQWLKTSHVCPLCRYPMPTSISVID. 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02214 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 237 IPR013083 -
Seca3g02214 242 SUPERFAMILY RING/U-box 189 237 - -
Seca3g02214 242 Pfam Ring finger domain 189 231 IPR001841 -
Seca3g02214 242 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 108 235 - -
Seca3g02214 242 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Seca3g02214 242 SMART ring_2 190 230 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02214 Seca-Chr3 39237925 39238653 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02214 150 235 C3H Transcription Factor Family AT1G18760 40.000 1.60e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02214 - - adu:110276959 221.861