Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02213 ATGCCTTCCATGCCATTTGATTTCTCCTGGGAAGTGAATTGTGTCCCCTTGAGCGGAGCCCAATTGGAATATTATCAAAACCTCGAAAAAAAGAATTTATTTGGAGATTATTTTCACATTGAGGTTCGTGTAGAACATCAACTATGCTTTGCCCAGTCAAACACACCACAACAACCCCCTTTGATAGTACCCTTTGCTTCGTTTTCATCTCAAAGGTCCATTTTTCTATGTAGTCAAGATTTTCTAGAAGACGGTTCATCATACATACAAATGCATTTTCCTAATTCTATCATTCCCCCTGAGTTAATTCAATCAATGATGCCAAACGTGATAGCATATGCTAAAGATGTGGTCGAGAATCGTTGTTCCGTTTTCCGCACTGAAATTTTGAATATTATAATTCAAAAGATATTTGACGAACCGGGTGATGATATTATCAACATGGTCATGGAGGAGTCCATGAGAGAGACCCAAATGGTTCCTGCATCCAAGATTGCCATTGAATCCCTCCAAAAAGTGAAGCTACAAGAAGGTGTTACCATGGAGAGATGTAGTATTTGTCTAGTGGAGTTCGATGATGGCATAGAGGTTTCATCAATGCCTTGCAAGCATGTTTATCACCATGAATGCCTTGTTCAGTGGCTTAAAACGAGTCATGTGTGTCCTTTGTGTCGCTATCCTATGCCTACTTCAATAAGTGATTAA 705 0.3943 MPSMPFDFSWEVNCVPLSGAQLEYYQNLEKKNLFGDYFHIEVRVEHQLCFAQSNTPQQPPLIVPFASFSSQRSIFLCSQDFLEDGSSYIQMHFPNSIIPPELIQSMMPNVIAYAKDVVENRCSVFRTEILNIIIQKIFDEPGDDIINMVMEESMRETQMVPASKIAIESLQKVKLQEGVTMERCSICLVEFDDGIEVSSMPCKHVYHHECLVQWLKTSHVCPLCRYPMPTSISD. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02213 234 ProSiteProfiles Zinc finger RING-type profile. 184 225 IPR001841 -
Seca3g02213 234 Pfam Ring finger domain 183 225 IPR001841 -
Seca3g02213 234 SUPERFAMILY RING/U-box 167 231 - -
Seca3g02213 234 SMART ring_2 184 224 IPR001841 -
Seca3g02213 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 231 IPR013083 -
Seca3g02213 234 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 103 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02213 Seca-Chr3 39225710 39226441 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02213 144 229 C3H Transcription Factor Family AT1G18760 40.000 1.15e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02213 - - psat:127082836 209.92