Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02203 ATGGTCGGCACCGTCATGGAAGTCAGTCCCTCCTGCAATGCCGGCACACCGCCGCACCGCAGTGTCCGCCGTAGGTTGGTCCAATCGACGCTCTTCCCTCTCAAGCCACCAGAACCCCTCGACAAACCCGATGAAAACGACGATAGAGAGGATGAACAAGATGAGGATTTCTGCGACACCGCCAATCGCAAGAAGAGGAAGCCAAAGGGAAAATCCACTCCTCGAAAAAAAGCTTCCAAGAATGCCACGCCAAAGAAAAATGCATCAGCTAATGGGATCAAGGGGTCAGCTTCGCGGCACGTGTTGGCTGATTCCGATCAGGTTGATACGCCGGTGCCTGATTTACGGTTAGAGGCAAAGTTGTCAGCTGAGGAAAATTCAAGGATGTTTGCAGGACGGCAAATGCATCCTTTTTTTTCATCATGGAAGGCAGGAAAGAAAGTTCAAGACCTGTCTGTCTCAGGAAGTAATTTATGCAAAGCTAAGAGTGAGGGTGAAAGTATTACATGTGGCCCTATTCATGTATTTGAAAATATTAAGGATGATACCTCATCCCTTGACTGGAGAAACTGGGCGTTTTTGGGAAATACCACCTATATGAATTATGGTTCAGATAGTTCAAATCCATCTGTTTTGGAGGGGTCTGTTAAATCCTTAAATTTTGCAACGCTTCTTAGTCCTTTGGATTCATCAGGTGCTTCAAAATTTCAGAATACCTCATCTTCTACAGATAGACTTTCTACACATCCAGAAAATCTGCTAGAAACGTTGCCATCAAGTGCAGCTTCACCAGTGCAACAAACTGTATGTCCTCAGATGCCAAAAGATGCTAAAGTGGACTTGGAGGTGGATGGATCTGTTGATTTTTTGCAAGCTGGGATTTTTAGAAAGTCAGATTCTGACCCATTGAGTAGATTTCTTCAAGAAAGTATGAGGTCATACTACCATAGTTGTGAAGCCAAGGCTGAAGGCAGTTTATGGACATACAAATACAAGCCAACAAAGGCTGTTGAGGTATGTGGTAATGACGAAGCTGTGAATTTCTTGCGTGACTGGCTACATCTTTGGCATGAAAGACGTTATCAAAGCAGGAAAGATGCATCTAATAGGGATAAAAGTAACATGCAAGATGATGATGATGATGATGATTATAAATTTTCCCATAGTGACTACGACTCAGAAGATATGGATGGGGAGGATTCCCTGCAGAATGTTCTTTTAATTACAGGACCAATTGGGAGTGGCAAGTCTGCAGCAGTCTATGCTTGTGCCCAAGAGCAAGGGTTTGACATATTAGAGCTCAATGCATCAGATTGTAGAAATGGGACTGTGGTCAAGCAATATTTTGGAGATACTCTTGGTTCACTTGGATTCAAAAGGTTATCAGAACACACTGCAAGTTCACAGAAGAAAAAAACGAAATTGCCACCAGCTCTGGCTTCATTTAATGTTAAAGCTGCTGATGAGGTGAATGATGGGGTGGTTGAACTAATAACCATATCTGACGATGAAGCTCATAGCCCTGGTGGAAAATCACAGAAGTTACTTGGCAAAAATAATGTCATTGCATGTGATAAAGTCCAAACTTTGATTCTAGTTGAGGATGTGGACATCCTTTTCCCTGAAGATCGTGGATGTATTGCTGCCATACAACAGATTGCTGAGACAGCAAGGGGGCCGATTATATTGACCAGCAATTGTGATAATCCCGGCCTGCCAGATAATTTTGATAAGCTCCACATTTCATTCTCATTGCCAACACCAAAGGAGTTGCTTTGCCATTTGTACACTGTTTGTCTCACAGAAGGAGTCAACATCCATCCTCTTTTACTGGAGAAGTTTATACAGTCTTGTGATGGAGATATTAGAAAAACCATTATGCATCTTCAGTTCTGGTTGCAGAGTAAAAGATTTAGAAAAGATGGAAAAGCACAAGCCGGTTATGGGTCACTTCCTTTTGATCTTCTTGTTGGCCATCAGTTATTGCCAAAGATGATGCCCTGGGATTTTCCCTCAGAGATATCCGAACTGATTGAGAATGAATTTGCTAAATCTGTAAATATAATGGAAGAGAACTCTAGTTTGCAAGAGTTAGATGAGCAGTATATGGAGACTGATTATATAAAGGCAAAGAAGGAGGAGATGATTGAGAGAAATGGATCTATAACAGATTACAGTGAGCTTGAAATTCAATATAATGCTATTTCTGAGTTTTCCAATTCTTCTGGATCCCCACTAGCATCCTCTCGGCAAAATGGTCGAGGGAAACTTGTAGTAATGTCCTCTGATTCTGAGGATGAGGATTCAAATAATAGATATCCTCTAGACACACATGATGAAGCTAGTAAGGGACAATCCATCAAAGAAAATAAAGAAAGTTCCTCTCAGTTTCAATTGCAGGAAAACTACCACAGCACAGCAGTTCGCAAACTGGTTTGTTCTGAATTGGAGGATTCAGAGGAGGAACATTTTAAATATTCAGAAACAGCTGAGGATACATGCTTGAATGAAACATGTAAATCAGTTGATATATCCTGTGTGCCAGAATCAACGTTAGTTCCTGAGACTGTGATGGAAGGTGGAACAGAGACAATGTCTGGAGCTGTGTCCTCTGGCCATCTTGTAGGTCCTGTAGAAGTTTCTGTAAATAATGAGTTGAAACCATTCACTTTCAGTGTTCGCAAACGCTTAGCAAAATTGTCACAAAATTCAGATTTGTTTGTGGATGGTGAAATTCCAGATTCTTCTCCAAAAGAGGTTGTGCAAGATTTTCTACATGAAAATATGGAAACTACAATTGTCAAGGTGATGGATGAGTGCAGTCGTGTGGATTTCAAACTAAAATCAGCATTTGTTGAGTCCAGTCCATCAATGGAGACAGATATGGTGCAACAGCTGTGGAGAAAACTCCGAGAGCGTCAAATGGATTTAAGACAGCATGTCAACTCAGAACAGCCAGGCGCGTTTCAAGTTGTTAAACTTGCTAGTAGGCTGAGCGGTCTAATTTCAGAAGCTGATTTATTTCATAATCACCGACAGAAATGTGATATTATGGAACCTCCAATGTTCCTTTCTGGTGAAGCCACATCTAGTTGGTATCATGAGCAAATAATGATGCCCACTATTGCTGTACATGGATTTTGTTTTTATGCAAAACTTATAGCAGATGTTGGATCAAAGTTTGGTTGTGCGGACATGGTTGATTTAACTTCTGAGATGTTGGCTTCCACAACTGATATTATGGCATTGGGGAAGTTATCTAGACAGGATCTCGCTAAAAGTATGATTATTTATACTGGAAAGGAATTAGAGTTGAACCACACAATAAATAATATGCGGAAGAGTGAAAACAAAACATCTCTGTTCGACGTCATCCAATCCATTGTTCCTGCCAGAATATCCTTGGCACTGAAAGGTGATGCATTCAATGAATATCTGTGTTCATTGCGCCAAATTTCTAGGTCAGAAGCTTCCCGTATTGCACAATGTGTCGAAAAGAAGAGAAGAGGAAGGGTGCGGGGTGCTCAACATTACTTGAGCAGATGCACAATGTTGTCCTCTGAAGACATATCTTTGGTGAATGAGGGTGATTTGTACAGAAAGACTTCTTCACAATATACAACTAACATGGAAAGCTGA 3639 0.4117 MVGTVMEVSPSCNAGTPPHRSVRRRLVQSTLFPLKPPEPLDKPDENDDREDEQDEDFCDTANRKKRKPKGKSTPRKKASKNATPKKNASANGIKGSASRHVLADSDQVDTPVPDLRLEAKLSAEENSRMFAGRQMHPFFSSWKAGKKVQDLSVSGSNLCKAKSEGESITCGPIHVFENIKDDTSSLDWRNWAFLGNTTYMNYGSDSSNPSVLEGSVKSLNFATLLSPLDSSGASKFQNTSSSTDRLSTHPENLLETLPSSAASPVQQTVCPQMPKDAKVDLEVDGSVDFLQAGIFRKSDSDPLSRFLQESMRSYYHSCEAKAEGSLWTYKYKPTKAVEVCGNDEAVNFLRDWLHLWHERRYQSRKDASNRDKSNMQDDDDDDDYKFSHSDYDSEDMDGEDSLQNVLLITGPIGSGKSAAVYACAQEQGFDILELNASDCRNGTVVKQYFGDTLGSLGFKRLSEHTASSQKKKTKLPPALASFNVKAADEVNDGVVELITISDDEAHSPGGKSQKLLGKNNVIACDKVQTLILVEDVDILFPEDRGCIAAIQQIAETARGPIILTSNCDNPGLPDNFDKLHISFSLPTPKELLCHLYTVCLTEGVNIHPLLLEKFIQSCDGDIRKTIMHLQFWLQSKRFRKDGKAQAGYGSLPFDLLVGHQLLPKMMPWDFPSEISELIENEFAKSVNIMEENSSLQELDEQYMETDYIKAKKEEMIERNGSITDYSELEIQYNAISEFSNSSGSPLASSRQNGRGKLVVMSSDSEDEDSNNRYPLDTHDEASKGQSIKENKESSSQFQLQENYHSTAVRKLVCSELEDSEEEHFKYSETAEDTCLNETCKSVDISCVPESTLVPETVMEGGTETMSGAVSSGHLVGPVEVSVNNELKPFTFSVRKRLAKLSQNSDLFVDGEIPDSSPKEVVQDFLHENMETTIVKVMDECSRVDFKLKSAFVESSPSMETDMVQQLWRKLRERQMDLRQHVNSEQPGAFQVVKLASRLSGLISEADLFHNHRQKCDIMEPPMFLSGEATSSWYHEQIMMPTIAVHGFCFYAKLIADVGSKFGCADMVDLTSEMLASTTDIMALGKLSRQDLAKSMIIYTGKELELNHTINNMRKSENKTSLFDVIQSIVPARISLALKGDAFNEYLCSLRQISRSEASRIAQCVEKKRRGRVRGAQHYLSRCTMLSSEDISLVNEGDLYRKTSSQYTTNMES. 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02203 1212 MobiDBLite consensus disorder prediction 64 82 - -
Seca3g02203 1212 MobiDBLite consensus disorder prediction 364 392 - -
Seca3g02203 1212 MobiDBLite consensus disorder prediction 760 800 - -
Seca3g02203 1212 MobiDBLite consensus disorder prediction 760 787 - -
Seca3g02203 1212 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 588 649 - -
Seca3g02203 1212 MobiDBLite consensus disorder prediction 1 107 - -
Seca3g02203 1212 MobiDBLite consensus disorder prediction 364 398 - -
Seca3g02203 1212 Gene3D - 324 578 IPR027417 -
Seca3g02203 1212 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 13 1204 IPR004582 GO:0006281
Seca3g02203 1212 MobiDBLite consensus disorder prediction 231 250 - -
Seca3g02203 1212 Gene3D - 586 647 - -
Seca3g02203 1212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 634 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02203 Seca-Chr3 39056070 39068220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02203 327 631 Core DNA Replication Machinery Family AT5G22010 22.540 9.87e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02203 K26118 - gmx:100784209 1659.81