Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02188 ATGTATCATTTTTTTGAGCAATTGCATGAAGACAACAGTCATAGAAAGATAAATGGATGGACTAGGTTCCAAGACAAAGCCTTTGAGCGAGCAATCAGAATCTTCCCAGAAGGCACAGAAGACCGATGGGAGAAAGTTGCTCGTCATGTTCCCGGCCAGTCACCAGCAAAGGTCAAGGAGCACTATGATGACTATCTCCATGACATTGCATCGATTGAGTCAGGTAACGTTGAGTTGCCAGATTACTTAGATGATTTAGTTTCAAAATCAACGATAGAAGATGATGGGCCTAGAGAGAAGACCCCTTCTCCTTGCGGCAAGAAAACGGTGCAATATTGGACTAAAGAGGAACACGGGTTATTTCTATCGGGGATCAAGCTATATGGTAAGGGAAATTGGAAAAGTATTTCAAAATACGCTGTTAAGTCAAAAACTGCAACTCAAGTTGCTAGCCATGCTCAGAAATTTTTTCTTCGTAAAGGTCAAATTGCCACCACAAAAGAGAAAAAAAGAACCAGCATCCGTGACACAGTCTAA 537 0.4153 MYHFFEQLHEDNSHRKINGWTRFQDKAFERAIRIFPEGTEDRWEKVARHVPGQSPAKVKEHYDDYLHDIASIESGNVELPDYLDDLVSKSTIEDDGPREKTPSPCGKKTVQYWTKEEHGLFLSGIKLYGKGNWKSISKYAVKSKTATQVASHAQKFFLRKGQIATTKEKKRTSIRDTV. 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02188 178 Gene3D - 12 79 - -
Seca3g02188 178 Gene3D - 111 163 - -
Seca3g02188 178 ProSiteProfiles Myb-like domain profile. 12 66 IPR001005 -
Seca3g02188 178 NCBIfam myb-like DNA-binding domain, SHAQKYF class 112 160 IPR006447 GO:0003677
Seca3g02188 178 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 113 161 IPR017930 -
Seca3g02188 178 SUPERFAMILY Homeodomain-like 19 74 IPR009057 -
Seca3g02188 178 FunFam Transcription factor SRM1 12 79 - -
Seca3g02188 178 CDD SANT 113 157 IPR001005 -
Seca3g02188 178 ProSiteProfiles SANT domain profile. 113 161 IPR017884 -
Seca3g02188 178 SUPERFAMILY Homeodomain-like 105 160 IPR009057 -
Seca3g02188 178 CDD SANT 20 66 IPR001005 -
Seca3g02188 178 ProSiteProfiles Myb-like domain profile. 113 157 IPR001005 -
Seca3g02188 178 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 17 177 IPR043363 -
Seca3g02188 178 SMART sant 109 159 IPR001005 -
Seca3g02188 178 SMART sant 16 68 IPR001005 -
Seca3g02188 178 Pfam Myb-like DNA-binding domain 112 155 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02188 Seca-Chr3 38959914 38961179 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g02188 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02188 - - psom:113338909 164.081