Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02178 ATGGAGGAACAAAATGGTAGTGGTAAGTTGAGTAAGGGACTCCGCAAGGTGAAGCCTTACCTTGCTATATTGTCCCTTCAATTTGGTTACTCTGGGATGTATATTATCACTATGGTTTCTTTCAAACATGGCATGAGCCATTGGATACTCTCAGTGTACCGTCATGTAGTTGCGGCCATTATCATAACCCCTTTCGCCCTTGTTCTTGAAAGAAAAATAAGGCCAAAGATGACTCTCCCTATATTCCTGAGGATAGTGGCACTTGGTTTCCTTGAGCCTGTGCTAGATCAAAACTTGTACAACATGGGGATGAAGATGACCTCAACAACGTTTGCATCCGCAACCGTTAATGTCCTTCCAGCCATTACTTTTATAATGGCACTCATTTTCAGGTTAGAGAGCATCGATTGGAGAAAATTTCACAGCGTGGCGAAGGTGATTGGAACGGTTATAACAGTTTCAGGGGCTATGGTTATGACTTTGTACAAAGGCCCTGCTTTTCAGATCATAAAGGGAGGAGGAGCAATTAACCACCATGGCAGCTCCAACACTGATGAACCCTCTGATCAGAACTGGATTCTTGGCACAATCATGCTTATTTCAAGTTGTGCTAGTTGGGCTGGCTTCTTCATTTTGCAATCATTCACTTTGAAGAAGTACCCAGCAGAGCTGTCACTGACAGCTTGGATTTGCTTGTTGGGAATTATTGAGGGTTCAATCGCATCTTTTATATTTGAACGGGACATGAGTGTGTGGGTCATAGGATGGGACTCAAGGCTTCTTGCTTGTGTTTATTCTGGGGTGATATGCTCTGGAATGGCATACTATGTACAAGGGGTTGTGACCAGGGAACGTGGACCAGTGTTTCTAACATCTTTCAGTCCAATGTGTATGATTATCACTGCTGCATTGGGTTCACTTGTCCTAGCTGAGCAAGTTCATTTGGGAAGTATATTTGGAGCTATTCTGATTGTGTCGGGGCTTTACACTGTGGTATGGGGCAAAAGCAAAGACAGACAGAACACAACAGATACAGGGAAAGGATTGCCAATTAAGGATGGTACAAGAACAGATCAATCAGACAATTTTGATGGCATTGAGATCAATGTTCCTGCCAAGAAAGGGGCAGGGAAAACTGCTCCACCACAAGCATGA 1155 0.4364 MEEQNGSGKLSKGLRKVKPYLAILSLQFGYSGMYIITMVSFKHGMSHWILSVYRHVVAAIIITPFALVLERKIRPKMTLPIFLRIVALGFLEPVLDQNLYNMGMKMTSTTFASATVNVLPAITFIMALIFRLESIDWRKFHSVAKVIGTVITVSGAMVMTLYKGPAFQIIKGGGAINHHGSSNTDEPSDQNWILGTIMLISSCASWAGFFILQSFTLKKYPAELSLTAWICLLGIIEGSIASFIFERDMSVWVIGWDSRLLACVYSGVICSGMAYYVQGVVTRERGPVFLTSFSPMCMIITAALGSLVLAEQVHLGSIFGAILIVSGLYTVVWGKSKDRQNTTDTGKGLPIKDGTRTDQSDNFDGIEINVPAKKGAGKTAPPQA. 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02178 384 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 153 - -
Seca3g02178 384 PANTHER WAT1-RELATED PROTEIN 19 339 IPR030184 GO:0016020|GO:0022857
Seca3g02178 384 Pfam EamA-like transporter family 194 332 IPR000620 GO:0016020
Seca3g02178 384 Pfam EamA-like transporter family 29 152 IPR000620 GO:0016020
Seca3g02178 384 SUPERFAMILY Multidrug resistance efflux transporter EmrE 252 337 - -
Seca3g02178 384 MobiDBLite consensus disorder prediction 339 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02178 Seca-Chr3 38702433 38707924 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02178 14 375 Nodulin-like Gene Family AT4G08300 64.481 4.76e-169 475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02178 - - gmx:100811114 668.692