Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02177 ATGGGTGCGTGGCTGAGAAATGCAAAGCCATATCTGCTATTGTTGGCGGTCCAATTTGGCTCTGCTGGCATGTTCATTTTCGCCATGGATGCTATCAAGAAAGGCATGAGCCATTACGTCTTCATCGTCTATCGTAATGCCATCGCCTCTATAACTCTCTCTCCCTTCGCATTTGTTCTAGAAAGATACGTAATTAATTCCTTCTCGGTACAATACATTAAATTAATTAATTATATGCAATATGGTGTTACTTTCAGAATAATACTCGATCAATGCTTCGCCCTCTTGGGGATGAAATTAACGTCAGCGTCGTTTTTATCTGCTGTGATGAACTCCGCACCCTCCATTACTTTTGTGTTGGCAGTCATTCTAAAATTGGAGCACATGAAGATTAAGGAGGTGGCATGTCAAGCCAAAATGATTGGCACTGCAGTAACTTTCGGAGGAACCTTGCTAATGGCACTGTACAAAGGTCCAATCGTTAGTTTTGTGCGATCATCATCAAGTCACCATGCTGCAGAGGCTGATCAGAATGTGACCGGCAACCACTGGGTCATAGGGACATGCTTCCTCCTCATTGGTTGTGCTGGCTTTTCTATGTTTTACATATTGCAGGCCATAACATTGAGAAAGTACCCAGCAGAAATGTCCCTGGCTACATGGGTTTGCTTTATAGGTGCACTTCAAAGCTCTGTTGTAGCATTTTTTGCAGAGCGGCACCACCCTCATGCCTGGTCTCTAGGTTGGGATACAAGACTCTTTGCCCCTGCTTACGCGGGGATAGTTACATCAGGGGTTCAGTATTACATACAAGGCATGGTCATAAAAACCATGGGTCCAGTTATTGTAACTGCTTTTAATCCCCTCCGTATGATCATAGTCACTGCCATGGCTTGCATCATTCTCTCTGAGCAACTCTACCTTGGAAGTATTGTTGGAGCAATAGTGGTGGTTATTGGGCTTTATGCTGTTGTGTGGGGAAAATCTAAAGAACACAAAGCTCGGATGCCTGCAACAGAGAACTCATTGCAAAACCAACAACAGCTACCGGTCACAGCTCCCAGAAAAGATAATAACTGTAACAAAATTGTTCATGGTGATGAAACAGGCGATGAGGAGGCCAAGGGAACAAGTCAAGGAAATTAA 1146 0.4389 MGAWLRNAKPYLLLLAVQFGSAGMFIFAMDAIKKGMSHYVFIVYRNAIASITLSPFAFVLERYVINSFSVQYIKLINYMQYGVTFRIILDQCFALLGMKLTSASFLSAVMNSAPSITFVLAVILKLEHMKIKEVACQAKMIGTAVTFGGTLLMALYKGPIVSFVRSSSSHHAAEADQNVTGNHWVIGTCFLLIGCAGFSMFYILQAITLRKYPAEMSLATWVCFIGALQSSVVAFFAERHHPHAWSLGWDTRLFAPAYAGIVTSGVQYYIQGMVIKTMGPVIVTAFNPLRMIIVTAMACIILSEQLYLGSIVGAIVVVIGLYAVVWGKSKEHKARMPATENSLQNQQQLPVTAPRKDNNCNKIVHGDETGDEEAKGTSQGN. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02177 381 Pfam EamA-like transporter family 9 153 IPR000620 GO:0016020
Seca3g02177 381 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020
Seca3g02177 381 SUPERFAMILY Multidrug resistance efflux transporter EmrE 221 331 - -
Seca3g02177 381 MobiDBLite consensus disorder prediction 338 355 - -
Seca3g02177 381 MobiDBLite consensus disorder prediction 360 374 - -
Seca3g02177 381 PANTHER WAT1-RELATED PROTEIN 10 339 IPR030184 GO:0016020|GO:0022857
Seca3g02177 381 MobiDBLite consensus disorder prediction 336 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02177 Seca-Chr3 38645059 38648041 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02177 5 373 Nodulin-like Gene Family AT2G37460 39.353 2.98e-98 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02177 - - gmx:100811984 544.658