Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02165 ATGGTTAAGTCAGAGCACAAGAAGATCAAAACAGAACCATCAAAGGCAATGAGATCTTTGTCTTCTTCATCAGCATCAGAATCATCAGATTGCAAGAAGAAGAAGTACAAGGGAGTCAGAATGAGGAGCTGGGGGTCATGGGTATCAGAGATTAGAGCACCAAATCAGAAAACAAGAATATGGTTAGGTTCTTATTCAACCCCAGAAGCAGCAGCCAGAGCCTATGATGCTGCACTTTTATGCCTTAAAGGCTCCTCAGCAAATCTCAATTTCCCTTTAAATTCTAATTCTCAATACATTCCTCAAGATACTTCCATGTCCCCAAAATCAATCCAAAGAGTTGCTGCAGCAGCTGCTAATAGTTTCATTCAAAATGCCAGCACTAGCACTAGCACTCCCTCTTCCTCACCTCCTCCCTCAACCTCATCATCATCAATAGCCTCCTCCCCATCAATGGCTTCTTCTCCCTCTGATCAAATGGATGATGATGTCTCACTCATGTCATCTTTTGAGGCCTATGATCAAGCTAATGAATCAATGGCTGTGATGGAACCTTGGTATAACAACTTAGATGGTCTACAATCTCCTAAATATGTTGATCAGATGTTAAGTGCTTCTTTATTTGATATTGATTCCTCCCATCTGCTTGATGATCTGTATGAAGAAAGTGACATTCGTTTGTGGAGCTTCTGCTGA 696 0.4138 MVKSEHKKIKTEPSKAMRSLSSSSASESSDCKKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTPEAAARAYDAALLCLKGSSANLNFPLNSNSQYIPQDTSMSPKSIQRVAAAAANSFIQNASTSTSTPSSSPPPSTSSSSIASSPSMASSPSDQMDDDVSLMSSFEAYDQANESMAVMEPWYNNLDGLQSPKYVDQMLSASLFDIDSSHLLDDLYEESDIRLWSFC. 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02165 231 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Seca3g02165 231 Gene3D AP2/ERF domain 34 94 IPR036955 GO:0003700|GO:0006355
Seca3g02165 231 MobiDBLite consensus disorder prediction 126 161 - -
Seca3g02165 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 165 - -
Seca3g02165 231 MobiDBLite consensus disorder prediction 1 36 - -
Seca3g02165 231 FunFam ethylene-responsive transcription factor ERF014-like 34 94 - -
Seca3g02165 231 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Seca3g02165 231 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Seca3g02165 231 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Seca3g02165 231 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
Seca3g02165 231 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Seca3g02165 231 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02165 Seca-Chr3 38420761 38421456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02165 36 230 AP2-EREBP Transcription Factor Family AT1G21910 48.341 1.66e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca3g02165 AP2 3e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02165 - - gmx:100819512 306.605