Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02163 ATGTCTTTGAGTCCTCCAAGAGAAAGAAACAATGACCAAGCCAGGACCTACCAGCTCTATTGGTGCTTCCAATGCAACCGCACGGTCCGGTTAGCACCCTCAAACCCCTCAGAGATCATGTGCCCACGCTGCTTCGGCCAATTCATCTGCGAAATCAACATCCCAAGGCCAAGACTCCTCGTCGATTTCACCACCCACGATCCTTCCCCAGAAGCGCGTTTGCTCGAAGCGCTTTCCCTCATGCTCGAACCACCCATTCGTCGCTTCAACGGTGAGCCCCAAACCCGACGCCCCCGTCGCCCCCAACCAACACCCGACGAAGTCCCCGTCGTGGTTCACACAAGGCGTCCCCGTCCCCGAAACCGCGGTTCGGATTCAACCCGACCCGAAGGTCCGGTACCCGAACCGGGAATCCAACATCGTCCGCGCACGTGGATCATTCTCCAACCCATCGATCCATCTTCCAACAACCCGAACCCCATCCCACGCGTTGCGGATGCGAGAGACTACTTTTTCGGGCCGGGTCTGAACGAACTGATCGAACAGTTGACGGAGAATGACCGGCCGGGTCCGGCACCGGTGGCGGAAAGAACGATTGAAGCGATTCCGACGGTGAAAATAGTGAGCAGTCATCTGAAGGAGAATTCGCAATGTCCTGTTTGTCAGGAAGAATTTGAAGTGGGTGGTGAAGCGAGGGAACTTCCATGCAAACATATATATCACTCTGAATGCATTGTTCCTTGGTTGAGGCTTCACAATTCTTGCCCTGTTTGTCGGAAGCAGATACCTGATTCTTCTTCGGAGGGGGAAGAGTGTATTGATGGAGAAAGCAGGTTGCGTAGGTGCTTGAGGTGGAGCCGTCTTTCATCTCTTTGGCCTTTCCATGGAGGAAGGTATCCACGGGTTCACCCTGAACGAGACAATGCTGCTTCTTCTTCTTCTTCAAGGGGTGATGCTTAA 960 0.5406 MSLSPPRERNNDQARTYQLYWCFQCNRTVRLAPSNPSEIMCPRCFGQFICEINIPRPRLLVDFTTHDPSPEARLLEALSLMLEPPIRRFNGEPQTRRPRRPQPTPDEVPVVVHTRRPRPRNRGSDSTRPEGPVPEPGIQHRPRTWIILQPIDPSSNNPNPIPRVADARDYFFGPGLNELIEQLTENDRPGPAPVAERTIEAIPTVKIVSSHLKENSQCPVCQEEFEVGGEARELPCKHIYHSECIVPWLRLHNSCPVCRKQIPDSSSEGEECIDGESRLRRCLRWSRLSSLWPFHGGRYPRVHPERDNAASSSSSRGDA. 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02163 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 265 IPR013083 -
Seca3g02163 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 127 263 - -
Seca3g02163 319 MobiDBLite consensus disorder prediction 86 142 - -
Seca3g02163 319 Pfam Ring finger domain 217 259 IPR001841 -
Seca3g02163 319 ProSiteProfiles Zinc finger RING-type profile. 218 259 IPR001841 -
Seca3g02163 319 SMART ring_2 218 258 IPR001841 -
Seca3g02163 319 CDD RING-H2_RNF126-like 217 259 - -
Seca3g02163 319 MobiDBLite consensus disorder prediction 111 125 - -
Seca3g02163 319 FunFam E3 ubiquitin-protein ligase RING1-like 182 265 - -
Seca3g02163 319 SUPERFAMILY RING/U-box 198 264 - -
Seca3g02163 319 Pfam zinc-ribbon 18 52 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02163 Seca-Chr3 38404220 38405200 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02163 145 294 C3H Transcription Factor Family AT1G68180 37.107 2.60e-24 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02163 K11982 - gmx:100787399 387.111