Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02154 ATGTACATGGAAATGGAAATGGAAATGGACATCGACCTCGACTTCTCCGGACACAGCACCCTCAGTACCAACACCCCAACTTCCGAAGACGACTACGGTTGCAACTGGAACCACTGGTCCCCCATCGTCAACTGGGACGCCTTCACCGGCACCCAAGACGACTTCCACCACCTCATGGACTCCATGATGGACGACGGTGCCGCCGCCGTGGTTCCTCTCAGCCCCGACCAGACCACATCCACCTCATCAGAGGAGGAAGAAGCAGCACCACCAGTGGGTGACGATTTGAAAGGCCTGAGGCTGGTGCACCTTTTGATGGCAGGCGCGGAGGCCCTAACGGGTGCTAACAAGAGCCGCGACTTGGCTCGAGTGATATTGGTTCGGCTCAAGGAATTGGTGTCTCACTCCCACGGCACCAACATGGAAAGACTCGCTGCTTATTTCACCGAGGCGCTCCACGGCCTGCTAGAAGGCGCAGGGGGTGCGCACAATAACAACAAACATTACGTCATCGGTGGTGGTGGTGGTGGGGCCCATGACCATCAAAACGACATCCTCGCAGCTTTCCAACTGCTTCAGGACATGTCTCCCTACGTCAAGTTCGGCCACTTCACCGCCAACCAGGCCATCTTAGAGGCCGTGGCCCACGAACGACGGGTCCACATCGTCGATTATGACATCATGGAAGGGGTCCAATGGGCCTCCCTTATGCAGGCCCTCGCCTCCAATAACAACGGCCCACACCTTCGCATCACTGCATTGTCCCGAACCGGCACCGGACGGAGGTCAATCGCTACCGTGCAAGAGACTGGACGGCGGTTAACGGCGTTCGCTGCCTCAATCGGGCAGCCGTTTTCTTTTCATCACTGTAGGTTGGATCCTGACGAAACGTTTCGGCCCTCCGCGGTTAAGCTTGTTCGAGGAGAGGCCTTGGTGTTCAACTGCATGCTGAATCTGCCTCATCTCAGTTACCGCGCGCCAGAATCGGTTGCGTCGTTTCTGAGTGGAGCCAAGGTGTTGAGGCCGAGGCTGGTGACGTTGGTGGAAGAGGAAGTGGGGTCTGTTCTTGGTGGGTTTGTGGAGCGGTTCATGGATACGCTCCATCACTACTCAGCGGTGTTTGACTCGCTGGAGGCTGGGTTTCCGATGCAGAGTCGGGCCAGAGCGTTAGTGGAACGGGTTTTCTTGGGCCCCCGGATAGCGGGCTCGGTGGCCCGGATCTACCGGACGGGTGGAGAGGAAGAGAGAAGGTCGTGGGGGGAGTGGTTGGGTGCGGCTGGGTTTAGGGGAGTTTCCATAAGTTCTGCCAATCATTGCCAAGCAAACTTGTTGTTGGGTCTTTTCAATGATGGGTATAGGGTGGAGGCGTTGGGTAGTCATAAGTTGGTATTGCAATGGAAATCAAGGCGCATGCTTTCAGCCTCCCTTTGGAGTTGTTCTTCAGAATCTGATTCCTAA 1458 0.5638 MYMEMEMEMDIDLDFSGHSTLSTNTPTSEDDYGCNWNHWSPIVNWDAFTGTQDDFHHLMDSMMDDGAAAVVPLSPDQTTSTSSEEEEAAPPVGDDLKGLRLVHLLMAGAEALTGANKSRDLARVILVRLKELVSHSHGTNMERLAAYFTEALHGLLEGAGGAHNNNKHYVIGGGGGGAHDHQNDILAAFQLLQDMSPYVKFGHFTANQAILEAVAHERRVHIVDYDIMEGVQWASLMQALASNNNGPHLRITALSRTGTGRRSIATVQETGRRLTAFAASIGQPFSFHHCRLDPDETFRPSAVKLVRGEALVFNCMLNLPHLSYRAPESVASFLSGAKVLRPRLVTLVEEEVGSVLGGFVERFMDTLHHYSAVFDSLEAGFPMQSRARALVERVFLGPRIAGSVARIYRTGGEEERRSWGEWLGAAGFRGVSISSANHCQANLLLGLFNDGYRVEALGSHKLVLQWKSRRMLSASLWSCSSESDS. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02154 485 MobiDBLite consensus disorder prediction 72 93 - -
Seca3g02154 485 ProSiteProfiles GRAS family profile. 92 478 IPR005202 -
Seca3g02154 485 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 80 473 IPR005202 -
Seca3g02154 485 Pfam GRAS domain family 101 477 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02154 Seca-Chr3 38283643 38285100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02154 98 482 GRAS Transcription Factor Family AT5G17490 36.041 4.15e-54 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca3g02154 GRAS 8.1e-98 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02154 - - tpra:123896871 733.021