Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02150 ATGAAACTGAAATCTATGCTAAGATTTTCTTTCATTTTCCTTTTGTTTATATCTATCTCTGCTTTAACCTTTTCAGATCATATCAATCCAAATTTCTCTGCTTCATATCTTCAATTCATTAGTGACACTGGCACCTTCTTGTTGTCTAGCAATAAAACATTCAAGGCTGCTATATTCAATCCTAGTGGTCAACAAACCAGTTTCTATCTTTGTGTCATTCATGTTGCATCCAGCACAATCATTTGGTCTGCTAACCGTGATGCCCCCATCTCAGATTCTGGTAAAATGAATCTAACTTCCAAAGGGATCACAATTTTTGATGAAGATGGAAACATCAAATGGTCAACACCACCACTAAAATCACCAGTAAATAAGCTTTCACTGACTGAGATGGGAAATCTTGTCTTACTTGATAAGTCAAATAATTCTCTTTGGGAGAGCTTCCAGCATCCAACTGACACAATTGTTATTGGACAGCGTTTACCTGTTGGTGCTTCCCTGTCAAGTGCTGCATCCAATTCAAACTTGTCAACAGGAAGTTACAATTTTACAATTACTTCCTCTGATGCAATACTTCAATGGTATGGTCAAACATACTGGAAATTGTCTATGGATACAAAAGTCTATAAGAATTCAAATAATATGGTGAAATACATGGCAATAAACAGCACAGGTTTTTATTTCATTGGACATGATGATATAGTGTCTGTCTATCAAGTTGGCTTGCCATTGGCTAATTTCAGAATTGCAAAATTGGCTTCCTCTGGCCAATTTACTCTTAGCAGCTTCTCTGGCACTAACTGGAAGCAGGAATTTGTGGTGCCAGATGATGGTTGTCAAACACCCTTTGTTTGTGGTAGAGCAGGATTATGTTCTCATAACACTGTTTCCTCTTCAGCTATTTGCTCTTGTCCCCCAAATTTTCATGTAGGCTCAGGTAATTTTGGTGGTTGTGTGCCAAGTGATGGATCTTATTCTTTGCCACTTGCTTGTCCCTCTACTGATTATGGCAATCAATCAAATTCTTCAGTAGTTTCATTTTTGAAAATAGGGAATGGTGTTCAGTACTTCAGCAATATTTACTCTGATCCAGTTATGTATGGAGTGAATTTATCTGCCTGTCAAGATTTCTGCTCTGATAACTGTTCCTGCTTGGGAATTTTCTATAAAAACTCTTCTGGTTCTTGCTTCATGATTGCAAATGGGTTGGGATCCATTCAGTCAAGTAATGCAGGTGGAAGTGACCTGTTAGGCTTCATTAAAGCTATTGCTGCATCAAAAACTACTAGTGATGATACTAATGATGGACAAACTTCTCAAAATGAGGGGTTTCCTGTGGCTGCTGCAGTGCTATTACCCATTGCTGGGTTCATTCTTTTTATGGTCCTAGTTTTCCTTGTGTGGAAAAGGTTGAAACTTTCAAAGAAGCAAGAATTGAAATTAGGGAAACCAAATTCACATTCTTCAGGGGACCTAGATGCCTTCTACATTCCAGGCTTACCTACAAGATTTGACTATGAAGAACTTGAGAAGGCTACTGATAATTTCAAGACTCTAATTGGGTCAGGTGGGTTTGGTGCTGTATACAAGGGTGTACTTCCTGATAAGACTGTTGTAGCAGTGAAGAAAATAGTCAATATTGGAATTCAAGGGAAAAAGGATTTCTGCACTGAGATTGCTATTATTGGAAATATTCACCATGTTAATTTGGTGAGACTGAAAGGTTTCTGTGCTCAAGGGAGACACCGTTTGTTGGTTTATGAGTACATGAACCGTGGATCACTGGATCGCCACCTCTTTGGTGGTGGACCAGTTTTGGAATGGCAAGAGAGGTTTGATGTGGCAATTGGAACAGCACGTGGACTTGCTTATCTACACAGTGGCTGTGAGCAAAAGATTATTCACTGTGATATCAAACCAGAGAACATTCTTTTGCAAGATCAATTTCAGGCTAAGATATCTGATTTTGGACTCTCAAAACTCCTTAGTCCTGAACAGTCTGGTTTGTTCACAACAATGAGAGGCACTCGTGGCTATCTTGCTCCAGAGTGGCTTACTAACTCTGCAATTACAGAAAAGACTGATGTGTACAGTTTTGGAATGGTACTTCTTGAACTTGTCAGTGGAAAGAAGAATTGTTCTTTTAAATCAAGAAGTCATAGCATGGAAGACAGCAACAGTGGTGGTGGTGGCAATTCATCAAACTCATCAACTTCAGGATTGGTTTATTTTCCACTATTTGCATTAGAGATGCATGAGCAAGGGAGTTACCTGGAATTGGCTGATCCAAGGCTAGAAGGACGTGTTACAAATGATGAGGTGGAGAAACTAGTTCGTATTGCCTTGTGTTGTGTTCATGAAGAACCAGCACTTAGGCCAAACATGGTTACTGTTGTTGGCATGTTGGAAGGTGGGACTCCATTGCCACAACCAAGGATGGAATCTTTGAATTTCTTGCGGTTTTATGGCCGTAGGTTTACTGAGGCTTCCATGATTGCAGAAGAAAATGAGTTTGGCTCTTTGATGCATCAACAAGCACGTAATTCAACAACCCTGACAGGGGGTTCACAAAATGGTTTTTCATACATATCTTCACAAAATATCTCTGGGCCAAGATAG 2619 0.3948 MKLKSMLRFSFIFLLFISISALTFSDHINPNFSASYLQFISDTGTFLLSSNKTFKAAIFNPSGQQTSFYLCVIHVASSTIIWSANRDAPISDSGKMNLTSKGITIFDEDGNIKWSTPPLKSPVNKLSLTEMGNLVLLDKSNNSLWESFQHPTDTIVIGQRLPVGASLSSAASNSNLSTGSYNFTITSSDAILQWYGQTYWKLSMDTKVYKNSNNMVKYMAINSTGFYFIGHDDIVSVYQVGLPLANFRIAKLASSGQFTLSSFSGTNWKQEFVVPDDGCQTPFVCGRAGLCSHNTVSSSAICSCPPNFHVGSGNFGGCVPSDGSYSLPLACPSTDYGNQSNSSVVSFLKIGNGVQYFSNIYSDPVMYGVNLSACQDFCSDNCSCLGIFYKNSSGSCFMIANGLGSIQSSNAGGSDLLGFIKAIAASKTTSDDTNDGQTSQNEGFPVAAAVLLPIAGFILFMVLVFLVWKRLKLSKKQELKLGKPNSHSSGDLDAFYIPGLPTRFDYEELEKATDNFKTLIGSGGFGAVYKGVLPDKTVVAVKKIVNIGIQGKKDFCTEIAIIGNIHHVNLVRLKGFCAQGRHRLLVYEYMNRGSLDRHLFGGGPVLEWQERFDVAIGTARGLAYLHSGCEQKIIHCDIKPENILLQDQFQAKISDFGLSKLLSPEQSGLFTTMRGTRGYLAPEWLTNSAITEKTDVYSFGMVLLELVSGKKNCSFKSRSHSMEDSNSGGGGNSSNSSTSGLVYFPLFALEMHEQGSYLELADPRLEGRVTNDEVEKLVRIALCCVHEEPALRPNMVTVVGMLEGGTPLPQPRMESLNFLRFYGRRFTEASMIAEENEFGSLMHQQARNSTTLTGGSQNGFSYISSQNISGPR. 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02150 872 Pfam S-locus glycoprotein domain 246 309 IPR000858 GO:0048544
Seca3g02150 872 Pfam Protein kinase domain 517 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02150 872 CDD STKc_IRAK 520 804 - -
Seca3g02150 872 Gene3D Phosphorylase Kinase; domain 1 494 589 - -
Seca3g02150 872 CDD B_lectin 43 151 IPR001480 -
Seca3g02150 872 FunFam Serine/threonine-protein kinase 590 810 - -
Seca3g02150 872 SMART blect_4 38 151 IPR001480 -
Seca3g02150 872 ProSiteProfiles Protein kinase domain profile. 514 813 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02150 872 Pfam D-mannose binding lectin 79 162 IPR001480 -
Seca3g02150 872 CDD PAN_AP_plant 339 421 - -
Seca3g02150 872 MobiDBLite consensus disorder prediction 717 736 - -
Seca3g02150 872 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Seca3g02150 872 ProSiteProfiles Bulb-type lectin domain profile. 31 149 IPR001480 -
Seca3g02150 872 PIRSF SRK 1 857 IPR024171 GO:0004674
Seca3g02150 872 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 40 811 - -
Seca3g02150 872 SUPERFAMILY Protein kinase-like (PK-like) 492 802 IPR011009 -
Seca3g02150 872 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 202 IPR036426 -
Seca3g02150 872 MobiDBLite consensus disorder prediction 849 872 - -
Seca3g02150 872 Gene3D Transferase(Phosphotransferase) domain 1 590 808 - -
Seca3g02150 872 ProSitePatterns Protein kinases ATP-binding region signature. 520 543 IPR017441 GO:0005524
Seca3g02150 872 SMART ntp_6 342 420 IPR003609 -
Seca3g02150 872 SMART serkin_6 514 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02150 872 Gene3D - 38 150 IPR036426 -
Seca3g02150 872 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 44 149 - -
Seca3g02150 872 FunFam serine/threonine-protein kinase PBS1-like 484 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02150 Seca-Chr3 38186544 38189162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02150 454 811 Receptor kinase-like Gene Family AT5G20050 39.788 4.45e-78 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca3g02150 Pkinase 2.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02150 - - psat:127084110 1286.55