Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02144 ATGGCGGAGAGTCAGACTCAGAGATCTACGGGCACAGTCAAATGGTTCAACGCGGAGAAGGGCTTCGGATTCATTTCTCCCGACGATGGCGCAGAGGATCTCTTCGTGCATTTCACTTCCATCCGATCCGATGGCTTTCGCACCTTGTCGGAGGGCCAGCAGGTGGAGTTCATCGTCAATTACGGCGACGATGGCCGAACCATGGCCGTTGACGTCACCTCCATGGTTAGATCTCGTCGTTTCGGTGGTTTTCGCGGTGGGAGAGGCAGAGGAGGCCGTGGTGATGGTAATAGAGGCGGAGGGATGGGGCGGAGAGGAGGAGGTTACGGTGGTGGTGGTGGAGGACCTGAGTGTTATAATTGCGGAAGAATAGGTCACTTGGCGAGAGACTGTTATCAAGGACAGGGTGCTGATGGTAGGAGTCGGAGACGCGGCGGCGGCAGTGGCGGCCGAGGAGGAGGAGGGTGTTTTAACTGCGGTGAGGAAGGGCATTTTGCGAGGGAATGTCCGAATGTTGAAAAATGA 525 0.5638 MAESQTQRSTGTVKWFNAEKGFGFISPDDGAEDLFVHFTSIRSDGFRTLSEGQQVEFIVNYGDDGRTMAVDVTSMVRSRRFGGFRGGRGRGGRGDGNRGGGMGRRGGGYGGGGGGPECYNCGRIGHLARDCYQGQGADGRSRRRGGGSGGRGGGGCFNCGEEGHFARECPNVEK. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02144 174 Gene3D - 1 73 IPR012340 -
Seca3g02144 174 SUPERFAMILY Retrovirus zinc finger-like domains 107 171 IPR036875 GO:0003676|GO:0008270
Seca3g02144 174 SMART csp_8 10 75 IPR011129 GO:0003676
Seca3g02144 174 PANTHER COLD SHOCK DOMAIN PROTEIN 2 4 172 - -
Seca3g02144 174 SUPERFAMILY Nucleic acid-binding proteins 5 74 IPR012340 -
Seca3g02144 174 MobiDBLite consensus disorder prediction 81 109 - -
Seca3g02144 174 ProSiteProfiles Cold-shock (CSD) domain profile. 8 74 IPR002059 GO:0003676
Seca3g02144 174 MobiDBLite consensus disorder prediction 135 163 - -
Seca3g02144 174 SMART c2hcfinal6 117 133 IPR001878 GO:0003676|GO:0008270
Seca3g02144 174 SMART c2hcfinal6 155 171 IPR001878 GO:0003676|GO:0008270
Seca3g02144 174 FunFam Cold shock protein CspC 8 75 - -
Seca3g02144 174 CDD CSP_CDS 10 73 IPR002059 GO:0003676
Seca3g02144 174 ProSitePatterns Cold-shock (CSD) domain signature. 22 41 IPR019844 -
Seca3g02144 174 ProSiteProfiles Zinc finger CCHC-type profile. 156 171 IPR001878 GO:0003676|GO:0008270
Seca3g02144 174 Gene3D - 146 174 - -
Seca3g02144 174 Gene3D - 114 145 - -
Seca3g02144 174 Pfam 'Cold-shock' DNA-binding domain 10 74 IPR002059 GO:0003676
Seca3g02144 174 PRINTS Cold shock protein signature 32 41 IPR002059 GO:0003676
Seca3g02144 174 PRINTS Cold shock protein signature 47 65 IPR002059 GO:0003676
Seca3g02144 174 PRINTS Cold shock protein signature 11 26 IPR002059 GO:0003676
Seca3g02144 174 ProSiteProfiles Zinc finger CCHC-type profile. 118 131 IPR001878 GO:0003676|GO:0008270
Seca3g02144 174 Pfam Zinc knuckle 117 131 IPR001878 GO:0003676|GO:0008270
Seca3g02144 174 Pfam Zinc knuckle 155 171 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02144 Seca-Chr3 38073088 38073612 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Seca3g02144 CSD 8.2e-26 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02144 - - gmx:100815773 196.438