Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02138 ATGGATGGGAAGGCTAACCTTCCGATCAAGCCAGATTCCTCCTCCCCGGACTTCCTCCGCCACGTTCAAGCCGCCTTGAAGCGTCATCGTCCTCTCGGTGCAATGCAGTCCAATTGTATAAGGCCAAGGCGCACGCTGCTTCCCCAACCACTCAGAAACAGCGCCGCTTCTGTTGATACATCATCCATCACGCCTCCGTCAATTTCGTCTGAAAGCAGCACTGTCAACCCTTCTCAAAATGTAGATGATGCTCACAAGAAAGTCCACTTTTCAATTCCTACCAACACTGCTCCACAGGGGGGCCATGATGGAAAGGCCACTGAGTTGGAGAACTTGTCATCTTATATGAGTTCACTTGGATTCACAGAAATGGAGTGGGTTGAAAGCAACCAGCTCGAAGCGTCCATTGGATTCAACCAAGACCCAAAGAACCTGAAATTTCAGCAGGCAGAGCATGGGCAAGGCTCGAGACCTGATGGAGTAGTAACTGTGTTACCAAAGAGAACTGTGGTTTCTCGGGATCATCTGCAGCAATTCAGAAACTTTTTAAGTCAGCCAGCAACGCAATCTTCCGTGGCAGGACCTTCGTGTGCTACGACTACCTCGGTCCATTCAACTTCAGCTCCCATGTTAAACTCAACAACCCGACTTCTAGATAGTGGCTCACGTGTGGCTGCTGAACCGTTACGGGAGCTTGATGTTAATCCTAATGCTATAAATGAAATAGTTATGGAATCATCAAATGCTTCCTTGAAAGAAACCAATAGAATGTCGGTTGATAAGGCAGCAATTGCAGTCCAAGCTTCTGATTCTTGTGTTGATGTGGCATTTAAGGAGAGTGATCATTCTAAGGAGCAACAAGGATGCGTGTTAAAAGAAACCAGCAATTTGAAATACACTTCTTGTGATGATGACAAGTTGGCTAAAGGGAAAGAGCCTGCAGATGTTGCCAATGTACAAACTCAGGCTCCAATGCCAAAAATGTCATCTTCAGATGTGACATTGGAGTCTTCTAAGTTAGAAAAGCGTGAGAAAGCTGCAAGTGCTAAAGTTTCCTCAGCCGCTCGCAAAAGAACCTATGACCCTGATTTGTTTTTTAAAGTCAATGGCAAGCTTTATCAACGTCTTGGCAAGATAGGTAGTGGTGGTAGCAGTGAGGTACACAAAGTGATTTCGTCAGACTGTAGGATCTATGCACTTAAAAAGATCAAGCTCAAGGGTCGTGATTATGCAACTGCATATGGGTTTTGTCAAGAGATTGAGTATCTAAACAGGCTGAAAGGAAAGGATAATATCATACAGCTTACAGATTATGAGGTGACTGACAAGGCTTTGCATGAAGAGGTTATGAAAGGCTCCTTCACTAACAAGGATGGCCGAGTCAAGGATGATGGATATATATACATGGTACTTGAATATGGAGAAATTGATCTAGCTCACATGTTGTCTCAGAAATGGAAAGAACTGGATGGATCCAACCAGACCATAGATGAGAACTGGCTCCGATTTTATTGGCAGCAAATTCTTCAAGCTGTCAACACTATTCATGAGGAGCGTATTGTACACTCTGATTTGAAGCCAGCCAACTTCCTCCTTGTCAAAGGTTCCCTAAAACTGATTGATTTTGGTATAGCCAAAGCAATAATGAGTGATACAACTAACATCCAAAGGGATTCACAGGTGGGTACTCTGAGCTACATGTCTCCGGAGGCATTTATGTGCAATGAGACAGATGCGAGCGGAAACATTATAAAATGTGGTCGGCCATCAGATATCTGGTCCCTGGGCTGCATCCTATATCAAATGGTATATGGGAGAACACCTTTCTCTGAATACAAGACATTTTGGGCCAAATTCAAAGTTATAACTGATCCAAATCATGAAATTACGTATGAACCTGTTTCAAACCCATGGCTTATTGATCTTATGAAGAGGTGTCTAGCATGGGATCGCAATCAAAGGTGGAGAATTCCTCAGCTACTCCAACATCCTTTTCTTGTTCCTCCTGTACCACATCATCCATCTTTGTCCCAAGACAATAGCTGTAAATTGCTACAACTTATTGCTGAAACTTGTACATATGACCCAGAAGCATCCCAGCTGTGTTGTCAGCTCCAACGGCTACTTGGTGATCCACTTGAGTTAACAACTCCTCACTCACTAAATTCACGAGATCAACAACGAAATCTGCTGTCCCAAATGTCACAACTCTGTATTCAGCTGCAGGAACGTTTGACAAATACTGATAACAAGTAG 2256 0.4375 MDGKANLPIKPDSSSPDFLRHVQAALKRHRPLGAMQSNCIRPRRTLLPQPLRNSAASVDTSSITPPSISSESSTVNPSQNVDDAHKKVHFSIPTNTAPQGGHDGKATELENLSSYMSSLGFTEMEWVESNQLEASIGFNQDPKNLKFQQAEHGQGSRPDGVVTVLPKRTVVSRDHLQQFRNFLSQPATQSSVAGPSCATTTSVHSTSAPMLNSTTRLLDSGSRVAAEPLRELDVNPNAINEIVMESSNASLKETNRMSVDKAAIAVQASDSCVDVAFKESDHSKEQQGCVLKETSNLKYTSCDDDKLAKGKEPADVANVQTQAPMPKMSSSDVTLESSKLEKREKAASAKVSSAARKRTYDPDLFFKVNGKLYQRLGKIGSGGSSEVHKVISSDCRIYALKKIKLKGRDYATAYGFCQEIEYLNRLKGKDNIIQLTDYEVTDKALHEEVMKGSFTNKDGRVKDDGYIYMVLEYGEIDLAHMLSQKWKELDGSNQTIDENWLRFYWQQILQAVNTIHEERIVHSDLKPANFLLVKGSLKLIDFGIAKAIMSDTTNIQRDSQVGTLSYMSPEAFMCNETDASGNIIKCGRPSDIWSLGCILYQMVYGRTPFSEYKTFWAKFKVITDPNHEITYEPVSNPWLIDLMKRCLAWDRNQRWRIPQLLQHPFLVPPVPHHPSLSQDNSCKLLQLIAETCTYDPEASQLCCQLQRLLGDPLELTTPHSLNSRDQQRNLLSQMSQLCIQLQERLTNTDNK. 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02138 751 MobiDBLite consensus disorder prediction 50 81 - -
Seca3g02138 751 CDD PKc_Mps1 371 666 IPR027084 -
Seca3g02138 751 Gene3D Phosphorylase Kinase; domain 1 366 452 - -
Seca3g02138 751 Pfam Protein kinase domain 373 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02138 751 SMART serkin_6 373 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02138 751 PANTHER MIXED LINEAGE PROTEIN KINASE 61 700 - -
Seca3g02138 751 ProSitePatterns Protein kinases ATP-binding region signature. 379 401 IPR017441 GO:0005524
Seca3g02138 751 MobiDBLite consensus disorder prediction 336 352 - -
Seca3g02138 751 MobiDBLite consensus disorder prediction 46 81 - -
Seca3g02138 751 ProSiteProfiles Protein kinase domain profile. 373 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02138 751 FunFam serine/threonine-protein kinase mph1 isoform X1 487 669 - -
Seca3g02138 751 FunFam serine/threonine-protein kinase mph1 isoform X2 366 453 - -
Seca3g02138 751 ProSitePatterns Serine/Threonine protein kinases active-site signature. 520 532 IPR008271 GO:0004672|GO:0006468
Seca3g02138 751 Gene3D Transferase(Phosphotransferase) domain 1 487 669 - -
Seca3g02138 751 SUPERFAMILY Protein kinase-like (PK-like) 367 672 IPR011009 -
Seca3g02138 751 MobiDBLite consensus disorder prediction 320 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02138 Seca-Chr3 37972572 37976816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02138 379 667 MAP Kinase Kinase Kinase AT4G08470 29.097 2.59e-23 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TTK Seca3g02138 Pkinase 2.2e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02138 K08866 - gmx:100788990 1067.37