Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02136 ATGGAGGATTTGCATAGTGCTCTGAAGGATCGTAATTTAGCAGTTTCCACCGTCCCAGAAAAGGGTCGCTCTCTCTTTGCTACAAGGGATTTCTACCCAGGGGAAGTGATTATAAGTCAAGAGCCTTATATTTGTGTTCCAAATAACTCCTCCCAGAAAAGGTGTGATGGTTGTTTCACAGCAACTAACCTTAACAAGTGCTCACGTTGCCAAGCTGTTTGGTATTGTGGAACCACATGTCAGAAGTCAGAATGGAAGTTGCATCGTCTTGAATGTGATGCCCTCTCCAGGCTAGACAGGGACAAGAGAAAATCTGTCACATCATCCATAAGGCTGATGGTGAAACTTTATCTTCGAAGAAAGTTGCAAAATGATAAGATCATTCCAAGCACTGCTATGGACAATTACAACTTGGTGGAGGCATTAGTAGCTCACATGTCTGACATCACTGAGGAGCAACTGGTGCTGTATGCACAGATGGCTAATCTTGTAAACTCAATACTTCAATGGCCTGAAATCAATATAAAAGAGATTGCAGAAATTTTTTCTAAGTTTGCATGTAATGCACATACCATTTGTGACAGTGAGTTGAGACCTTTGGGCACTGGATTGTATCCTGTTATTTCCATTATCAATCACAGCTGCTTGCCCAATTCGGTGTTGGTTTTTGAGGGAAGGTCAGCAGTGGTACGTGCTGTGCAGCATGTACCCAAAGGAACTGAGGTACTGATAAGTTATATAGAGACAGCTGGAAGCACTTTGACTCGACAAAAGGCTCTCAAAGAGCAGTACCTATTCACTTGTACTTGTCCCCGCTGTTCTAAAGTGGGTCAGTATGATGATATCCGAGACAATGCAATTCTAGAAGGATACCGATGCAAAAATGAAAAATGTGATGGTTTCTTGCTTCGTACAACTGTCTGA 924 0.4232 MEDLHSALKDRNLAVSTVPEKGRSLFATRDFYPGEVIISQEPYICVPNNSSQKRCDGCFTATNLNKCSRCQAVWYCGTTCQKSEWKLHRLECDALSRLDRDKRKSVTSSIRLMVKLYLRRKLQNDKIIPSTAMDNYNLVEALVAHMSDITEEQLVLYAQMANLVNSILQWPEINIKEIAEIFSKFACNAHTICDSELRPLGTGLYPVISIINHSCLPNSVLVFEGRSAVVRAVQHVPKGTEVLISYIETAGSTLTRQKALKEQYLFTCTCPRCSKVGQYDDIRDNAILEGYRCKNEKCDGFLLRTTV. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02136 307 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 14 275 - -
Seca3g02136 307 Pfam SET domain 22 246 IPR001214 GO:0005515
Seca3g02136 307 ProSitePatterns Zinc finger MYND-type signature. 55 92 IPR002893 -
Seca3g02136 307 Pfam MYND finger 55 92 IPR002893 -
Seca3g02136 307 Gene3D - 54 104 - -
Seca3g02136 307 ProSiteProfiles Zinc finger MYND-type profile. 55 92 IPR002893 -
Seca3g02136 307 SUPERFAMILY SET domain 10 246 IPR046341 -
Seca3g02136 307 SMART set_7 11 253 IPR001214 GO:0005515
Seca3g02136 307 Gene3D - 105 189 - -
Seca3g02136 307 ProSiteProfiles SET domain profile. 11 247 IPR001214 GO:0005515
Seca3g02136 307 Gene3D SET domain 24 273 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02136 Seca-Chr3 37943811 37947967 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca3g02136 SET 8.8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02136 K11426 - gmx:100789518 534.258