Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02130 ATGGCACAAACGCTGGCAATGCCTGTGGCACCCTCACTCGCTGTCATCTGCAATGGCTACTTCTCCAACAGAGTCTCTTTTCCTGTTCTGAGCCCTCCCAACTCTAAGGTTCACGGGTTAAGCATCCAGTGTGTTCGTGTTGGGGGTGTGGAGATTCCAAACAACAAGCGAATTGAGTACTCTCTGCAGTACATTCATGGAGTTGGGAGGAGCAGAGCGCGACAAATCCTCTGTGACATCAACATGGACAACAAAATCACCAAGGACCTCTCTGAAGAGGAGCTCATTACTCTCAGAGATGAAGTGTCCAAATACATGATTGAAGGAGACTTGAGACGGTTCAATGCGATTAATATAAAGAGACTGAAGGATATCCAGTGCTATAGAGGAATAAGGCATATTCAGGGGCTTCCCTGTAGAGGACAGCGTACCAAGAACAATTGCAGGACCTTGAAGGGTAAGAAGGTTGCCATTGCAGGGAAGAAGAAAAAGTAA 495 0.4687 MAQTLAMPVAPSLAVICNGYFSNRVSFPVLSPPNSKVHGLSIQCVRVGGVEIPNNKRIEYSLQYIHGVGRSRARQILCDINMDNKITKDLSEEELITLRDEVSKYMIEGDLRRFNAINIKRLKDIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02130 164 Gene3D 30s ribosomal protein s13, domain 2 114 164 IPR027437 -
Seca3g02130 164 Pfam Ribosomal protein S13/S18 46 150 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca3g02130 164 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 40 162 - -
Seca3g02130 164 SUPERFAMILY S13-like H2TH domain 45 156 IPR010979 GO:0003676
Seca3g02130 164 FunFam 30S ribosomal protein S13 114 163 - -
Seca3g02130 164 ProSiteProfiles Ribosomal protein S13 family profile. 47 153 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca3g02130 164 ProSitePatterns Ribosomal protein S13 signature. 129 142 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca3g02130 164 FunFam 30S ribosomal protein S13 37 113 - -
Seca3g02130 164 NCBIfam 30S ribosomal protein S13 46 155 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca3g02130 164 Hamap 30S ribosomal protein S13 [rpsM]. 44 160 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca3g02130 164 Gene3D - 45 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02130 Seca-Chr3 37757569 37758762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02130 43 162 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 30.822 2.18e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02130 K02952 - gmx:100500355 261.922