Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02128 ATGGCAGCGGTGGCTTCCGTGGACAAGCGTTTGTACAGTACTAGCCCCAAACACGGTGTCGCTCGGATCTTCGAGTCAAGCCAGGATGTGATGCGTGGGATGAAAAAGACACCGGAACCGCTGTTGCTATCGGATTCCTCAACCGATGAGGAAGATGGAAATGATCTGAAGAAGGACCTGATTAGAAAGGGAAACAACGAAGTTGAAGCGTCCATCTTCGATCCTCGCGACGAGGGAACCTTGGACCACTGGATCCAACGGAGCGCCTCTCTTATCCGCCTCACAGGAAAGCACCCTTTCAACTCAGAGCCACCACTCTCACGCCTCATGCACCATGGCTTCATCACCCCTGTCCCAATCCACTATGTCCGTAACCATGGGCCCGTTCCCAAGGCCCGTTGGGAAGACTGGACCGTTGAGGTCTGCGGCCTAGTTAAGCGCCCGGCCCAGTTCACCATGGATCAGCTGGTCCACGACTTCCCCAGCCGAGAGTTCCCTGTTACACTCGTCTGTTCGGCTAACCGTCGCAAGGAGCTCAACATGGTGAAACAGAGCATCGGCTTCAACTGGGGACCTGCTGCCACTTCCACTTCTGTGTGGCGTGGTGTACCGTTGAGGAGCGTGCTCAAGCGATGTGGGATTTATAGCCGCAATAGTGGGGCCCTCTATGTTTGCTTCGAAGGCGCGGATGAGCTGCCAGGTGGCGGTGGGTCCAACTACGGGACAAGTATCCTGAGGGAGGTTGCACTGGATCCCTCCCGCGACATCATCCTCGCTTACATGCAAAACGGTGAGCTTTTGGCTCCGGATCATGGGTTTCCATTACGGGTCATAATACCGGGTTTCACTGGTGGCCGCATGGTGAAATGGTTGAAGCGCATAGTTGTCACTACCCATGAATCTGACAGCTATTACCATTACCATGACAACAGAACACTTCCCTCCCACGTTGATGCTGAGCTTGCTAATGCAGAAGGTTGGTTCTACAAGCCAGAGTATGTTATCAATGAGATGAACATAAACTCAGTGATAACAACGCCGTGCCACGACGAGATCTTGCCCATTAACTCGTGGACTACTCAGAGGCCTTATGTACTAAGAGGCTTCGCATATTCCGGGGGTGGGAGAAAGGTGACACGTGTTGAGGTGACAATGGATGATGGTGAAATATGGCAAGTATGCAAGTTGAACCATCTAGAGAAACCAAACAAATATGGTAAGTATTGGTGTTGGTGCTTCTGGTCCTTGGAAGTTGAGGTGTTTGATATACTTCGAGCCAAAGAAATTGCGGTGCGTGCTTGGGACGAGGCCCTTAACACCCAACCTGAGAAGCTCATTTGGAATCTCATGGCAATCAAAACTAACGTGTGCAGGCCCCACAAGGGAGAGATGGGCATAGTGTTCGAGCACCCGACCCAACCAGGTAACCATTCTGGTGGTTGGATGGCTAAAGAAAGACTCCTAGATAAATCATCAGAGTCTACCCCAACTCTTAAGAAGAGTGTCTCCTCAACATTCATCAACACTACTAGCTCTAAAACATATACCATGTCTGAGGTTATAAGGCATAACAACGCCGATTCGGCTTGGATCGTCGTCCACGACCATGTCTACGATTGCACTCACTACCTCAAGGACCACCCTGGTGGCATCGACAGCATACTCATCAATGCCGGCACTGATTGTACTGAGGAGTTTGAAGCCATCCACTCTGACAAAGCTAAGAAAATGATTGAGGTTTATCAAATTGGCAAGCTCGTGACCACTAACTACCCTTCTGACTCGTTGCTTGATAACTCTATGTATGACGACAATTCTAACATCATCCATTTGGCCCCAGCCAAGGAAGTTACACCATTGTGTAGTGTGGCTCTAATAAACCCACGCGAGAAGATCGCATGCAAGCTCCTATCAAAAACGTCCATCTCCCACGACGTTAGGATCTTACGTTTTGCATTGCCTTCCAAGGATCAAATATTGGGTTTGCCAATAGGGAAACACATATTCTTATGTGCCACCATTAACGAGAAGCTATGCATGCGAGCTTACACTCCAACAAGCACCGATGATGAAGTGGGGTACTTCGATCTAGTGGTCAAGATTTACTTCAAAGGGGTGCACCAAAAGTTCCCTAATGGTGGCCTTATGTCTCAACACTTAGACTCTCTACCTATTGGATCAATCTTGAATGTGAAAGGTCCATTGGGCCACATAGAATACATTGGAAAAGGAAACTTTCTTATTCATGGAAAACACAAGTTTGCCAAGAGGCTGGCCTTGTTGGCTGGTGGTACTGGGATCACACCTATTTACCAAGTGATCCAAGCGATTCTTAAGGATCCAGAAGATCACACCGAAATGCACTTCATATATGCAAATCGAACTGAGGATGATATACTGTTGAGGGAAGAGATCGATGCATGGGCTAAAGAGCATGAACAACTCAAGGTGTGGTATGTGGTACAGGAAAGCGTAAAAGAAATGTGGCAATATAGTGTAGGTTTCATCACAGAAAGTATCCTAAGGGAACATATTCCTAAAGCATCCCAAGATACATTGGCTTTGGCCTGTGGACCATCACCTATGATTCAGTTTGCAGTGCAACCAAAATTGGAGAGGTTAGGTTATGATATCAAGAACAATTTGTTTGTGTTTTAA 2658 0.4804 MAAVASVDKRLYSTSPKHGVARIFESSQDVMRGMKKTPEPLLLSDSSTDEEDGNDLKKDLIRKGNNEVEASIFDPRDEGTLDHWIQRSASLIRLTGKHPFNSEPPLSRLMHHGFITPVPIHYVRNHGPVPKARWEDWTVEVCGLVKRPAQFTMDQLVHDFPSREFPVTLVCSANRRKELNMVKQSIGFNWGPAATSTSVWRGVPLRSVLKRCGIYSRNSGALYVCFEGADELPGGGGSNYGTSILREVALDPSRDIILAYMQNGELLAPDHGFPLRVIIPGFTGGRMVKWLKRIVVTTHESDSYYHYHDNRTLPSHVDAELANAEGWFYKPEYVINEMNINSVITTPCHDEILPINSWTTQRPYVLRGFAYSGGGRKVTRVEVTMDDGEIWQVCKLNHLEKPNKYGKYWCWCFWSLEVEVFDILRAKEIAVRAWDEALNTQPEKLIWNLMAIKTNVCRPHKGEMGIVFEHPTQPGNHSGGWMAKERLLDKSSESTPTLKKSVSSTFINTTSSKTYTMSEVIRHNNADSAWIVVHDHVYDCTHYLKDHPGGIDSILINAGTDCTEEFEAIHSDKAKKMIEVYQIGKLVTTNYPSDSLLDNSMYDDNSNIIHLAPAKEVTPLCSVALINPREKIACKLLSKTSISHDVRILRFALPSKDQILGLPIGKHIFLCATINEKLCMRAYTPTSTDDEVGYFDLVVKIYFKGVHQKFPNGGLMSQHLDSLPIGSILNVKGPLGHIEYIGKGNFLIHGKHKFAKRLALLAGGTGITPIYQVIQAILKDPEDHTEMHFIYANRTEDDILLREEIDAWAKEHEQLKVWYVVQESVKEMWQYSVGFITESILREHIPKASQDTLALACGPSPMIQFAVQPKLERLGYDIKNNLFVF. 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02128 885 Gene3D - 337 505 - -
Seca3g02128 885 SUPERFAMILY E set domains 337 458 IPR014756 -
Seca3g02128 885 Pfam Cytochrome b5-like Heme/Steroid binding domain 516 586 IPR001199 -
Seca3g02128 885 MobiDBLite consensus disorder prediction 34 55 - -
Seca3g02128 885 Pfam Oxidoreductase molybdopterin binding domain 126 305 IPR000572 -
Seca3g02128 885 PRINTS Eukaryotic molybdopterin domain signature 193 208 IPR008335 GO:0016491
Seca3g02128 885 PRINTS Eukaryotic molybdopterin domain signature 114 130 IPR008335 GO:0016491
Seca3g02128 885 PRINTS Eukaryotic molybdopterin domain signature 284 297 IPR008335 GO:0016491
Seca3g02128 885 PRINTS Eukaryotic molybdopterin domain signature 335 347 IPR008335 GO:0016491
Seca3g02128 885 PRINTS Eukaryotic molybdopterin domain signature 366 380 IPR008335 GO:0016491
Seca3g02128 885 PRINTS Eukaryotic molybdopterin domain signature 92 106 IPR008335 GO:0016491
Seca3g02128 885 PRINTS Eukaryotic molybdopterin domain signature 167 178 IPR008335 GO:0016491
Seca3g02128 885 PRINTS Eukaryotic molybdopterin domain signature 445 458 IPR008335 GO:0016491
Seca3g02128 885 PRINTS Eukaryotic molybdopterin domain signature 407 417 IPR008335 GO:0016491
Seca3g02128 885 PRINTS Eukaryotic molybdopterin domain signature 178 190 IPR008335 GO:0016491
Seca3g02128 885 PRINTS Eukaryotic molybdopterin domain signature 432 444 IPR008335 GO:0016491
Seca3g02128 885 PRINTS Eukaryotic molybdopterin domain signature 251 267 IPR008335 GO:0016491
Seca3g02128 885 PRINTS Eukaryotic molybdopterin domain signature 268 281 IPR008335 GO:0016491
Seca3g02128 885 PRINTS Eukaryotic molybdopterin domain signature 380 392 IPR008335 GO:0016491
Seca3g02128 885 FunFam Nitrate reductase 337 505 - -
Seca3g02128 885 Gene3D - 76 326 IPR036374 -
Seca3g02128 885 PRINTS Cytochrome B5 reductase signature 681 688 - -
Seca3g02128 885 PRINTS Cytochrome B5 reductase signature 660 671 - -
Seca3g02128 885 PRINTS Cytochrome B5 reductase signature 759 778 - -
Seca3g02128 885 PRINTS Cytochrome B5 reductase signature 853 861 - -
Seca3g02128 885 PRINTS Cytochrome B5 reductase signature 797 808 - -
Seca3g02128 885 PRINTS Cytochrome B5 reductase signature 726 740 - -
Seca3g02128 885 SMART Cyt_b5_2 515 587 IPR001199 -
Seca3g02128 885 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 512 587 IPR001199 -
Seca3g02128 885 PANTHER SULFITE REDUCTASE 63 458 - -
Seca3g02128 885 FunFam Sulfite oxidase, mitochondrial 510 591 - -
Seca3g02128 885 Pfam Mo-co oxidoreductase dimerisation domain 333 456 IPR005066 GO:0016491|GO:0030151
Seca3g02128 885 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 829 845 IPR001709 GO:0016491
Seca3g02128 885 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 759 778 IPR001709 GO:0016491
Seca3g02128 885 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 797 808 IPR001709 GO:0016491
Seca3g02128 885 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 785 794 IPR001709 GO:0016491
Seca3g02128 885 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 681 688 IPR001709 GO:0016491
Seca3g02128 885 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 546 556 IPR001709 GO:0016491
Seca3g02128 885 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 853 861 IPR001709 GO:0016491
Seca3g02128 885 Pfam Oxidoreductase NAD-binding domain 760 867 IPR001433 GO:0016491
Seca3g02128 885 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 509 590 IPR036400 -
Seca3g02128 885 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 74 335 IPR036374 -
Seca3g02128 885 FunFam Nitrate reductase [NADH] 736 885 - -
Seca3g02128 885 Pfam Oxidoreductase FAD-binding domain 634 740 IPR008333 -
Seca3g02128 885 SUPERFAMILY Riboflavin synthase domain-like 623 742 IPR017938 -
Seca3g02128 885 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 143 178 IPR022407 GO:0043546
Seca3g02128 885 Gene3D Translation factors 621 735 - -
Seca3g02128 885 Gene3D - 736 885 IPR039261 -
Seca3g02128 885 CDD eukary_NR_Moco 77 455 - -
Seca3g02128 885 PIRSF Nitr_rd_NADH 8 884 IPR012137 GO:0006809|GO:0042128|GO:0050464
Seca3g02128 885 Gene3D - 507 591 IPR036400 -
Seca3g02128 885 PRINTS Cytochrome B5 signature 562 569 IPR001199 -
Seca3g02128 885 PRINTS Cytochrome B5 signature 547 561 IPR001199 -
Seca3g02128 885 PRINTS Cytochrome B5 signature 537 547 IPR001199 -
Seca3g02128 885 PRINTS Cytochrome B5 signature 574 586 IPR001199 -
Seca3g02128 885 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 543 550 IPR018506 GO:0020037
Seca3g02128 885 FunFam NADH-cytochrome b5 reductase 620 735 - -
Seca3g02128 885 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 729 880 IPR039261 -
Seca3g02128 885 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 629 741 IPR017927 GO:0016491
Seca3g02128 885 CDD cyt_b5_reduct_like 634 885 - -
Seca3g02128 885 FunFam Nitrate reductase 78 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02128 Seca-Chr3 37721531 37728133 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02128 626 876 NADPH P450 reductases AT5G17770 38.340 2.45e-48 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02128 K10534 - gmx:732634 1431