Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02127 ATGGGTGATGATAGTATTGATTTAACTACACCAACCAAAGGTTTAAATGATCCAGTTGATACGTTGGAGGAATGGGTTCCAAAGTGTGATGAAGAAATCAAACCTGTAGTTGGCAAAGTCTTTGATACTTTAGAACAAGGAGGGGACTTTTATCAAAGGTATGCACATACTGCTGGTTTTAGTGTACGCAAAGCAACTGAAACAAAAGATAAAAATGGAGAAACAAAGTGGAAATATTTTCTTTGCTCTAAAGAAGGCTTCAAATTAGAAACAAAAGAGGGTCTAACTGAGTTGCTTGTTGATGATAAAAAATTGCCTAAAACCAGACGAAGAAAACTAACAAGGGAAGGGTGTAATGCAAGGATTGTTTTTAAGAGGACACAAGAAGGAAAATATGAAGTGGTGCGATTTCATGAAGGTCATACACATGCGTTAGCTACACCTAAAAAGAAGCAGTTCTTAAGATCTGCAAGGAGTATAAATAATGTTCATAAGAATTTATTACATTGTTATAATAGAGCTAATGTAGGCCCTTCAAAAGTGTATCAATTATTGAAAGAGCAGGTTGGGAGTTATGATAGTATAGGATGCACAAAGAGAGATCTCCAAAATTATTCTAGAGACTTGAAAGAGTTAATCAAAGACTCTGATGCACATATGTTTCTTGATAATTTTAGGAGAAAAAATGAGATGAACCACTCTTTTTATTATGACTATGAGGTTGATAATGAAGGGAGATTGAAATATGTGTTTTGGGCAGATGGTCTTTGTCGAAAAAATTACTCTTTGTTTGGTGATGTCATTTCATTTGATACAACATACAATACAAATAAATATTGTATGATTTTTGCACCATTCACTGGCATAAATCATCATAGGCAGAGCATAACTTTTGGGGCTGCCTTCCTAGCAGATGAGAAAGTTGAATCATTTGAGTGGTTGTTTGAAACATTTTTGAAAGCAATGGGAGGGCATAAACCTATTGTGATTATAACAGACCAGGACCCAGCCATGAAAATTGCAATTGAGAAGGTTTTCACAGGTTCTTCTCATAGATTTTGCATGTGGCACATACTGAAAAAACTTTCAGAGAAGGTGGGTGTTTCCTTGAATTCCAATGCTGATTTTAACAGTCGTTTTAAGACCTGTGTTTGGAATTCAGAGTCTCCAGATGAATTTGAATTGACTTGGAAAGCTATCATTATTGATTTCAAGTTAGAAGAAAATGGTTGGCTTTCACAAATGTATGACATGCGAAGTATGTGGATACCGGCTTATTTCAAAAGTATTTTTCTAGCTGGAATTTTTCTAGCATTCCTATAA 1323 0.3492 MGDDSIDLTTPTKGLNDPVDTLEEWVPKCDEEIKPVVGKVFDTLEQGGDFYQRYAHTAGFSVRKATETKDKNGETKWKYFLCSKEGFKLETKEGLTELLVDDKKLPKTRRRKLTREGCNARIVFKRTQEGKYEVVRFHEGHTHALATPKKKQFLRSARSINNVHKNLLHCYNRANVGPSKVYQLLKEQVGSYDSIGCTKRDLQNYSRDLKELIKDSDAHMFLDNFRRKNEMNHSFYYDYEVDNEGRLKYVFWADGLCRKNYSLFGDVISFDTTYNTNKYCMIFAPFTGINHHRQSITFGAAFLADEKVESFEWLFETFLKAMGGHKPIVIITDQDPAMKIAIEKVFTGSSHRFCMWHILKKLSEKVGVSLNSNADFNSRFKTCVWNSESPDEFELTWKAIIIDFKLEENGWLSQMYDMRSMWIPAYFKSIFLAGIFLAFL. 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02127 440 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 30 435 IPR031052 GO:0006355
Seca3g02127 440 Coils Coil 437 440 - -
Seca3g02127 440 Pfam FAR1 DNA-binding domain 49 146 IPR004330 -
Seca3g02127 440 Pfam MULE transposase domain 267 361 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02127 Seca-Chr3 37700424 37701746 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g02127 FAR1 5.7e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02127 - - mtr:112420857 566.614