Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02122 ATGCGTCGGTTTTTCGGCCATAGAAAGCAAATCAACGCCATGGATTCCAAGAAGCTACGAAGAAAACCCAAGCTCGAGCGCCGTAATGCCCTCAAGTACTTTGAGTACGATGCTGGATCGTCTTCCTCTTCGCTCGATGACTCTTCCTCCGGTTCGCTCTACACTCGTTCCATGGAGATCTACGACCGCACCAGCTTCCGTATTGAGGGAATCGAAGGCGAGTTCGATCGAATTTGCAGGAGTTTGGGGCTGTCGGGGCCGGAAGACTTTGCTATTCCCGCCGCCGCATGGGAGGCCATGAAGGTTCGATCCTCTTCTGATATTCTTCCGAGGTTGAAGCGCAACGAGATGAATCTTCCGGAGAAGGAAGAGCCCGAGGCAAACGAGGAGAGCAACGTAGCAGAGAAAGATGAATTGAGCGAAGATGAGGTTAGGGTTAGATTAAGAGACGTTGATGATTCGGGTCCCGCTGAGACTAGCGGGTGTTGCGCTGAAAGTGGTGGTGGAGGTATTAATGGTGTTCGTCCTCCGATGCTTAAGCCACCACCGGGGATGAGGGTTCCGATTGCTGATAACACTTGCTCCACTTGGGACCTTTTGAGGGATTTAGCCCCGCAAGGTGAAGAAGGGATTTTTGACGAGGAGCGGGAATTAACGGAGAAAGAAGAAGGGGAAGTTGATAGGGCTAGTCCGAAGAAAGAAGAAGATGGGGCGGATAATGCAGCAAGGATTGCAGAGATTGTTGCCGGGCTTTCAGAATCGTGTTCGTTTACTACATCGAATGAAGATGATTCTTCTAGCACTGCCACGGACCCAAGGTCCAATAATGTATCTCCTAATGGGAGAATAAAGCGTGTCATTACCCCTAGCAGCTGGCAAAAGGGTGAGTTTTTGGGGGGTGGCTCCTTTGGGTCCGTCTATGAAGGAATTTCTGACGATGGATTCTTTTTTGCGGTAAAAGAAGTTTCACTGCTTGATCAAGGGAGTCAGGGAAAACAAAGTGTCTATCAACTGGAGCAGGAAATTGCACTTTTGAGCCAATTTGAACATGAAAATATAGTTCAATACTATGGCACTCAAATGGATGAATCAAAGCTGTATATCTTTATTGAGCTTGTAACCAAAGGTTCCCTCAGAAACCTCTATCAGAAGTATACTCTTCGAGATTCCCAAGTATCTGCCTATACAAGACAGATTCTGCATGGTTTGAAGTATCTTCATGACCAAAATGTGATTCACAGGGATATTAAATGTGCAAATATATTGGTGGATGCAAATGGATCTGTCAAGCTTGCAGATTTTGGACTAGCAAAGGCAACCAAATTGAATGATGTTAAATCATGCAAGGGGACAGCATTCTGGATGGCCCCTGAGGTTGTGAAGGGAAGGAACCAAGGTTACGGGCTTCCAGCTGATATGTGGAGTCTGGGATGCACTGTGCTTGAGATGCTCACGGGCCAAATTCCCTACTCTGATTTTGAATGTATGCAGGCACTATTTAGAATTGGAAAGGGCGAGCGACCTCCTATTCCTGACTCTCTTTCAAGAGATGCAAGGGATTTTATCCTGCAGTGCCTTCAAGTTAATCCGGGTGATCGTCCCACTGCTGGTCAACTCTTAAACCATCCATTTGTCCAAAGGCCAGTTTCCCAGTCCTCTGGTTCCTCGTTTCCTTACATTCATGGCAGAAAGAGTTAA 1698 0.4706 MRRFFGHRKQINAMDSKKLRRKPKLERRNALKYFEYDAGSSSSSLDDSSSGSLYTRSMEIYDRTSFRIEGIEGEFDRICRSLGLSGPEDFAIPAAAWEAMKVRSSSDILPRLKRNEMNLPEKEEPEANEESNVAEKDELSEDEVRVRLRDVDDSGPAETSGCCAESGGGGINGVRPPMLKPPPGMRVPIADNTCSTWDLLRDLAPQGEEGIFDEERELTEKEEGEVDRASPKKEEDGADNAARIAEIVAGLSESCSFTTSNEDDSSSTATDPRSNNVSPNGRIKRVITPSSWQKGEFLGGGSFGSVYEGISDDGFFFAVKEVSLLDQGSQGKQSVYQLEQEIALLSQFEHENIVQYYGTQMDESKLYIFIELVTKGSLRNLYQKYTLRDSQVSAYTRQILHGLKYLHDQNVIHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSCKGTAFWMAPEVVKGRNQGYGLPADMWSLGCTVLEMLTGQIPYSDFECMQALFRIGKGERPPIPDSLSRDARDFILQCLQVNPGDRPTAGQLLNHPFVQRPVSQSSGSSFPYIHGRKS. 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02122 565 MobiDBLite consensus disorder prediction 213 239 - -
Seca3g02122 565 MobiDBLite consensus disorder prediction 115 183 - -
Seca3g02122 565 MobiDBLite consensus disorder prediction 221 239 - -
Seca3g02122 565 FunFam Mitogen-activated protein kinase 1, putative, expressed 290 557 - -
Seca3g02122 565 ProSiteProfiles Protein kinase domain profile. 292 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02122 565 Pfam Protein kinase domain 293 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02122 565 ProSitePatterns Protein kinases ATP-binding region signature. 298 320 IPR017441 GO:0005524
Seca3g02122 565 SMART serkin_6 292 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02122 565 MobiDBLite consensus disorder prediction 115 154 - -
Seca3g02122 565 MobiDBLite consensus disorder prediction 255 282 - -
Seca3g02122 565 SUPERFAMILY Protein kinase-like (PK-like) 281 549 IPR011009 -
Seca3g02122 565 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 68 553 - -
Seca3g02122 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
Seca3g02122 565 Gene3D Transferase(Phosphotransferase) domain 1 290 559 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02122 Seca-Chr3 37524363 37534288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02122 24 549 MAP Kinase Kinase Kinase AT4G08500 51.384 1.36e-176 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca3g02122 Pkinase 2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02122 K13414 - gmx:100819999 845.499