Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02113 ATGGGTTCACTTGACTGTTGTTCATTGCGTGGTGATGAGATGGCGGTTTTGTCTCTGAATTCACTGCCTTTAGGGTTCCGATTCCGACCTACAGATGAGGAACTCATCGATTACTACCTGCGACAGAAGATCAATGGCAATGGTGAAGAAGTTTGGGTTATCAGAGAAATTGATGTCTGCAAGTGGGAACCCTGGGATTTGCCTGATTTGTCAGTGATAAGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCACAGGACCGCAAGTATCCAAATGGGCATAGATTGAACAGAGCAACAAATCATGGGTATTGGAAGGCAACAGGCAAGGATCGTAAAATCAAGTCTGGGTCTATCTTGATTGGAATGAAGAAGACTTTAGTCTTCTATAATGGTCGTGCACCAAAAGGGAAGAGGACTAATTGGGTTATGCATGAGTATAGGCCTACCCTGAAGGAGCTTGATGGTACCAATCCTGGACAGAATGCGTATGTCCTTTGTCGATTATTTAAGAAACATGATGAGAGCCTTGAAGCTTCAAACTGTGATGAAGTAGAGCAGACTACTTCAACTCCTATGGCTGCCAATTACTCTCCAGAAGAAATACAATCTGATTCAGCTCTTATTGCAGTATCCCCATCACAGGTTACAGAAGATGATAAGCATCAAGCAATTATCCCCGAGATGTCTGAAGAAACAATATCCAACATTGTAACCCCGGTTGATTGCTATAGTGACAGATATGATGCTCAAAATCAAATTGTAAAACTACCTGCGGAGGAGGATCAGCCGTTGAACTTTGACATATTTGATGACCCAAGTTACGATCTCTTAGATGACAAATTATTTTCCCCAGTACTTGTGCATATTCCACAAGAATTTCATTATCAAGCAAACAATGAATCAGATGGTCGATGTGCACTTCAATATGGTACAAATGAACCAAATATTTCAGACCTTTTTAATTGGGAGCAACTCTCCTATGAGGAGCCTGGTTGTCAACAGCAGAACTTCCCCTTGTTTAATGTTAAGGATAGTGGATCGGGCAGTGACTCAGATGTGGAAGTAGCCAATATGACTATGCTGCAGTGTATGCAAGCTACTTATTCTGAGGCAATTGACAGAAGGATTCCTTTGGTGACAACACCAGAATTTTGCAGCACCATTGGAATCCCCTTTAACCATAGTGTTGATGAGCAGAAGATCAATGTTGGGTTATTTCAAAATAATGCCCAGATGGCTTTTTCATCTGATGTCAATATGGGCCAAGTGTACAATGTGGTCAATGATTATGAGCAACCAAGAAACTATAATATAGCTGCTGGTGGTGAAATTGGAATCATAAGAAGGCCTAGACTGGCACAAAATGAACATCTGAACACAAACTCAACGCAAGGTATTGCAAACAGGAGAATTCGTTTGTTAAAGAGAGCACATGGCTCAAATAGGATGGTGAAAGATCGGAGTTGTGCACAAGAAAAGCATAATTCAAAACCAGTCATTGCAGTGGACAAGAAAGCTTCAGATAATCATGTTGCAGATGAAAGTGCTAGTCTTACTAATTATGTGAATGAACTGCAGAAGACACCTGAGTCAACCAACAATAGAAAGATTTCTCAACAAGTTGCAAATGCAGGTTCCACCTTGTTAAAAGATATTTTATTGCTCAGAAGGGTGCCTTACATATCAAAGGCTTCCTCCAATCTTACCATGTGGTCTTATGTTTTTGTAGTTTCTGCCTTTGTACTGCTCTTATTAGTGGTCTATACTAACATAATATGGGGGTATCTTAAATTTTGA 1800 0.4056 MGSLDCCSLRGDEMAVLSLNSLPLGFRFRPTDEELIDYYLRQKINGNGEEVWVIREIDVCKWEPWDLPDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRKIKSGSILIGMKKTLVFYNGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNAYVLCRLFKKHDESLEASNCDEVEQTTSTPMAANYSPEEIQSDSALIAVSPSQVTEDDKHQAIIPEMSEETISNIVTPVDCYSDRYDAQNQIVKLPAEEDQPLNFDIFDDPSYDLLDDKLFSPVLVHIPQEFHYQANNESDGRCALQYGTNEPNISDLFNWEQLSYEEPGCQQQNFPLFNVKDSGSGSDSDVEVANMTMLQCMQATYSEAIDRRIPLVTTPEFCSTIGIPFNHSVDEQKINVGLFQNNAQMAFSSDVNMGQVYNVVNDYEQPRNYNIAAGGEIGIIRRPRLAQNEHLNTNSTQGIANRRIRLLKRAHGSNRMVKDRSCAQEKHNSKPVIAVDKKASDNHVADESASLTNYVNELQKTPESTNNRKISQQVANAGSTLLKDILLLRRVPYISKASSNLTMWSYVFVVSAFVLLLLVVYTNIIWGYLKF. 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02113 599 ProSiteProfiles NAC domain profile. 22 172 IPR003441 GO:0003677|GO:0006355
Seca3g02113 599 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 21 230 - -
Seca3g02113 599 FunFam Nac domain-containing protein 86 31 175 - -
Seca3g02113 599 Gene3D NAC domain 31 176 IPR036093 GO:0003677|GO:0006355
Seca3g02113 599 SUPERFAMILY NAC domain 14 172 IPR036093 GO:0003677|GO:0006355
Seca3g02113 599 Pfam No apical meristem (NAM) protein 23 148 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02113 Seca-Chr3 37440552 37444380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02113 14 519 NAC Transcription Factor Family AT4G35580 39.313 1.32e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g02113 NAM 5.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02113 - - gmx:100777071 838.18