Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02098 ATGGCTCCCAGCAGACCTCAAAAGGTAGTGCAAATGGAAGAAGAAGAAGATGGGCATGATGATGAGCCCAAGAAAAATGTGGTCAGAACATTGTCATTCTTTAAACTGTTGAGCTATGCTGACTTAGTGGATTGGATTCTAATGGGTTTGGGAGTTGTAGGCTCCATTGTGCATGGTATGGCACTTCCTGTTGGGTACCTATTGTTAGGAAAAGCTCTTAATGCTTTTGGGGACAATATTAATGACCAAGATGCCATGGTCGATGCTCTTAAACAAGTTGTTCCATTTGTGTGGTACATGGCCATAGCCACATTTCCTGCTGGGGTACTTGAAATTGGTTGTTGGATGTATACAAGTGAAAGACAGTTATTACGCCTAAGATTAGCATATCTAAGAGCAGTCCTGAGCCAAGAGATAGGGGCTTTTGATACAGAACTAACAGGTGGAAAAGTCATCACTGGAATAAGCAAGCACATGAGTGTCATACAAGATGCCATTGGTGAGAAGCTGGGTCACTTCACCTCTAGCTGTGCAACTTTCTTTGCTGGAATTGTTATTGCTACCATATGTTGTTGGGAAGTGGCACTTCTGTGTTTAGTGGTTGTCCCGCTTATTCTTATAATTGGGGCAACATATACCAAGAAAATGAACACCATATCAACCACCAAATTGCTTTACCATTCTGAAGCTACATCTATGATAGAGCAGACAATATCACATATTAAAACAGTATATGCTTTTGTTGGAGAGAGCACTGCCATCAAATCCTTCACAGAGAACATGGATAAACAGTACATTATAAGCAAAGGGGAGGCACTTGTGAAGGGAGTTGGAACAGGGATGTTTCAAACTGTGAGTTTCTGTTCTTGGGCTCTCATTATATGGGTTGGAGCAGTTGTGGTCAGAGCCGGGAGGGCAAAGGGAGGAGACATAATAGCTGCAGTGATGAGTATTCTTTTTGGTGCTATATCTCTCACATATGCAGCACCAGACATGCAAATATTCAATCAGGCAAAGGCTGCAGGATATGAGGTTTTCCAAATGATCCAAAGAGAGCCACTAATAAAAAATGAACCAAAAGGGAAGATGCCTAGGAAAATTAAAGGTGACATTGAGCTACGAGATGTCTACTTTTCCTACCCATCAAGGCCAGAGAAACCTATCCTTCAAGGACTGTCCTTGTCAATTCCAGCTGGAAAGACAGTAGCACTAGTTGGTACCAGCGGGTGTGGAAAGAGCACTGTTATTTCCCTGGTTACCAGATTTTATGACCCCCTGAGAGGAGAAATTTTGATTGATGGTCACAAAATCAAGGATCTAGATCTGAAGTTTCTGAGAAGAAATATAGGAGCTGTTTCCCAAGAACCATCACTCTTTGCAGGCACCATCAAGGATAACTTGAAGCTGGGAAAAATGGATGCAAATGACGAAGAGATACAGAAGGCGACAGTAATGTCAAATGCACACACTTTCATATCACAGCTGCCTAATCAGTACCTAACAGAGGTAGGACAAAGGGGCGTCCAATTATCAGGAGGTCAGAAACAGAGAATTGCAATAGCAAGAGCCATTCTGAAAAATCCTCCCATCCTTTTGCTTGATGAGGCCACTAGTGCCCTTGATACAGAGTCAGAAAAGCTGGTTCAAGAAGCACTTGAGACAGCTATGCAGGGAAGGACTGTCATCTTGATTGCACATAGGCTCTCAACGGTTGTAAATGCAGACATGATTGCTGTAGTGGAAAATGGACAAGTTGTAGAGACAGGAACACACCAGAGTTTGTTAAACACAAGCAAATTCTATAGTACGTTATTCAGCATGCAGAACCTTGAAAAACCAGTTCCAGAATCCAGATCACGAACCAAAGGGTGTAAAGGAAGCACTCTAATCAAATTTAAATGTTTAATGGATAGAACTACAATTTCCAAAAATAGAAGTGCCCGCCAAGAAGATATTATTCCTGATGAAATTAGACCACCACAAGAGACCCAGAAAGAGGTCCAAAGAACTCTCCCTGAGCATTCTGTACTAAAGGAACAGAACAAGTCAAGCACAAGAGAAAGAAATATATTTTTCAGAATTTGGTTTGATTTAAAAAAGAAGGAGCTGGTGAAGATTGCTATTGGCTCGCTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCATTTTTTGGATTCTACATCATCACCATTGGAGTAGCATACTTTCATGAAGATGCAAAGCGGAAAGTTGGATATTTTTCAGCCATTTTCTCTGCAATAGGGTTGCTTTCATTATTTAGCCACACCTTCCAGCATTACTTCTTTGGAATGGTTGGAGAAAAGGCCATGGCAAATCTCAGACGTGCTCTCTATTCAGGTGTGCTTCGGAATGAAGTAGGCTGGTTTGACAAATCTGAGAACACTGTTGGCTCATTAACTTCACGCATTATCAGTGATACTTCCATGGTCAAAATCATAATTGCTGATCGCATGTCCGTGATTGTGCAATGTGTTTCCTCCATACTGATAGCAACAGTTGTCAGCATGATTGTCAACTGGAGAATGAGTTTGGTAGCTTGGGCTGTGATGCCCTGCCACTTCATAGGTGGTCTCATTCAAGCCAAGTCTGCCAAAGGGTTTTCAGGTGACTACTCCACTGCACATTCTGTGCTTGTTGCTCTTGCATCGGAGTCTGCAACCAACATAAGGACTATTGCATCATTTTGTCATGAAGAGGAAATACTGAAGAAAGCCAAAACATCTCTGGAAATTCCAATGAAGAAGTACAGGAATGAAAGTATCAAATATGGTATCATTCAAGGTTTCTCCCTTTGCTTGTGGAACATTGCACATGCTGTTGCTTTGTGGTACACAACAATTCTGGTTGACAGACGTCAAGCCTCCTTTGAAAATGGAATAAGATCATACCAAATTTTTTCTCTCACAGTGCCTTCTATCACGGAATTATACACACTGATCCTAACTGTCATCTCTGCTATCAATATACTAACCCCAGCATTCAAAACCCTTGACCGTAAAACTGAAATTGAACCAGATAAACCGGATGATTCCCAGCCTGAGAGGATCCAAGGAACTGTTGAATTTGATCATGTAATATTCAACTACCCTTCAAGACCTGCAGTCACTGTTCTTGACAATTTCAGTTTACAAATTGAAGCTGGATTGAAAGTGGCTTTTGTAGGACCAAGTGGCGCTGGAAAATCCTCTGTTTTGGCCCTTTTACTAAGATTTTATGATCCAGGTGCAGGAAAGGTATTAATTGATGGGAAAGACATACGGGATTATAATCTAAGATGGTTAAGGACACAAATAGGGCTGGTACAGCAAGAGCCACTGCTTTTTAACTGCTCGATTAGCGACAATATTTGCTATGGCAATAATGGGGCTTCTGAAAGTGAAATAGTGGAGGTTGCCAGAGAAGCAAACATACATGAATTTGTGAGTAATCTGCCAAATGGATATAACACTGTTGTAGGAGAGAAAGGCTGCCAGCTTTCAGGAGGACAAAAGCAAAGAATAGCCATTGCCAGAACCTTACTAAAGAAGCCTGCAATACTGCTCCTTGACGAAGCAACAAGTGCTCTTGATGCTGAGTCTGAAAGAATTATAGTAAATGCTTTAAAAGCAATGAACCTGAAAACCACCCAGATCACAGTAGCTCATAGACTTTCCACAGTAATAAACTCAGATACCATAATTGTCATGGATAAAGGTAAAATTGTAGAGATGGGCTCCCACTCAACCTTAATAGCAGAAGATGTGGGGCTTTATTCTAAGTTATTCAGGTTACAGAGCTTTGAAGAAGCCTCATAG 3813 0.4138 MAPSRPQKVVQMEEEEDGHDDEPKKNVVRTLSFFKLLSYADLVDWILMGLGVVGSIVHGMALPVGYLLLGKALNAFGDNINDQDAMVDALKQVVPFVWYMAIATFPAGVLEIGCWMYTSERQLLRLRLAYLRAVLSQEIGAFDTELTGGKVITGISKHMSVIQDAIGEKLGHFTSSCATFFAGIVIATICCWEVALLCLVVVPLILIIGATYTKKMNTISTTKLLYHSEATSMIEQTISHIKTVYAFVGESTAIKSFTENMDKQYIISKGEALVKGVGTGMFQTVSFCSWALIIWVGAVVVRAGRAKGGDIIAAVMSILFGAISLTYAAPDMQIFNQAKAAGYEVFQMIQREPLIKNEPKGKMPRKIKGDIELRDVYFSYPSRPEKPILQGLSLSIPAGKTVALVGTSGCGKSTVISLVTRFYDPLRGEILIDGHKIKDLDLKFLRRNIGAVSQEPSLFAGTIKDNLKLGKMDANDEEIQKATVMSNAHTFISQLPNQYLTEVGQRGVQLSGGQKQRIAIARAILKNPPILLLDEATSALDTESEKLVQEALETAMQGRTVILIAHRLSTVVNADMIAVVENGQVVETGTHQSLLNTSKFYSTLFSMQNLEKPVPESRSRTKGCKGSTLIKFKCLMDRTTISKNRSARQEDIIPDEIRPPQETQKEVQRTLPEHSVLKEQNKSSTRERNIFFRIWFDLKKKELVKIAIGSLAAAFSGISKPFFGFYIITIGVAYFHEDAKRKVGYFSAIFSAIGLLSLFSHTFQHYFFGMVGEKAMANLRRALYSGVLRNEVGWFDKSENTVGSLTSRIISDTSMVKIIIADRMSVIVQCVSSILIATVVSMIVNWRMSLVAWAVMPCHFIGGLIQAKSAKGFSGDYSTAHSVLVALASESATNIRTIASFCHEEEILKKAKTSLEIPMKKYRNESIKYGIIQGFSLCLWNIAHAVALWYTTILVDRRQASFENGIRSYQIFSLTVPSITELYTLILTVISAINILTPAFKTLDRKTEIEPDKPDDSQPERIQGTVEFDHVIFNYPSRPAVTVLDNFSLQIEAGLKVAFVGPSGAGKSSVLALLLRFYDPGAGKVLIDGKDIRDYNLRWLRTQIGLVQQEPLLFNCSISDNICYGNNGASESEIVEVAREANIHEFVSNLPNGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERIIVNALKAMNLKTTQITVAHRLSTVINSDTIIVMDKGKIVEMGSHSTLIAEDVGLYSKLFRLQSFEEAS. 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02098 1270 Gene3D ABC transporter type 1, transmembrane domain 978 1023 IPR036640 GO:0005524|GO:0016020
Seca3g02098 1270 MobiDBLite consensus disorder prediction 9 23 - -
Seca3g02098 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 707 1005 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g02098 1270 CDD ABC_6TM_Pgp_ABCB1_D2_like 700 1009 - -
Seca3g02098 1270 ProSitePatterns ABC transporters family signature. 1165 1179 IPR017871 GO:0005524|GO:0016887
Seca3g02098 1270 SUPERFAMILY ABC transporter transmembrane region 35 358 IPR036640 GO:0005524|GO:0016020
Seca3g02098 1270 CDD ABC_MTABC3_MDL1_MDL2 1026 1264 - -
Seca3g02098 1270 CDD ABC_6TM_Pgp_ABCB1_D1_like 48 345 - -
Seca3g02098 1270 PANTHER ABC TRANSPORTER B FAMILY 8 759 IPR039421 -
Seca3g02098 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 371 607 IPR003439 GO:0005524
Seca3g02098 1270 Gene3D ABC transporter type 1, transmembrane domain 686 967 IPR036640 GO:0005524|GO:0016020
Seca3g02098 1270 FunFam ABC transporter B family member 1 1016 1265 - -
Seca3g02098 1270 MobiDBLite consensus disorder prediction 1 23 - -
Seca3g02098 1270 Pfam ABC transporter 1044 1193 IPR003439 GO:0005524
Seca3g02098 1270 SMART AAA_5 1053 1239 IPR003593 GO:0016887
Seca3g02098 1270 SMART AAA_5 398 590 IPR003593 GO:0016887
Seca3g02098 1270 MobiDBLite consensus disorder prediction 659 680 - -
Seca3g02098 1270 Gene3D - 1024 1269 IPR027417 -
Seca3g02098 1270 FunFam ABC transporter B family member 4 361 615 - -
Seca3g02098 1270 Pfam ABC transporter transmembrane region 49 322 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g02098 1270 Pfam ABC transporter transmembrane region 708 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g02098 1270 SUPERFAMILY ABC transporter transmembrane region 698 1012 IPR036640 GO:0005524|GO:0016020
Seca3g02098 1270 Gene3D ABC transporter type 1, transmembrane domain 35 626 IPR036640 GO:0005524|GO:0016020
Seca3g02098 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 608 IPR027417 -
Seca3g02098 1270 Pfam ABC transporter 389 538 IPR003439 GO:0005524
Seca3g02098 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 50 337 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca3g02098 1270 ProSitePatterns ABC transporters family signature. 510 524 IPR017871 GO:0005524|GO:0016887
Seca3g02098 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1026 1262 IPR003439 GO:0005524
Seca3g02098 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1018 1264 IPR027417 -
Seca3g02098 1270 CDD ABC_MTABC3_MDL1_MDL2 371 608 - -
Seca3g02098 1270 Gene3D - 361 609 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02098 Seca-Chr3 36813114 36820701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02098 21 1266 Calmodulin-binding Proteins AT2G36910 40.952 0.0 953
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02098 K05658 - zju:107414909 1785.77