Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02097 ATGGAGACTCTGAAAGCTGCGATTCCTGAAGGCCTGAAGCGAGTGATTGGGGAGAGTACAGTCGATGATCTTCGCAGCACGTGTTCTTCTCTTCATCGCTTCTTTCTTCATTTCGAGCCATTTCACCAGATGGTGACTGAATTGGCTGACCCGAAGTATGCTCTGTGCGGCAAGAATAAGGACGCTGCATTAAAATCCAAGCAGCTTGGCAATCACTGCTTCTCGAACGCAGATTACGCGAAGGCTTTGGATTGCTATACTCAGGCATTGCGCAAGGCTCCTTTCGAGGCTGGTCACACGGGAAATAATCTCATCGCGTCGTTGTATATTAATCGAGCTACTGTATTGCATAAAATGAGTCTTTTAATGGAATGTTTACGAGATTGCAATCGTGCTCTTCAGATATGTCCAAGCTATGCCAAGGCATGGTATAGGAGAGGTAAGGCCAATGCTTCATTGGGGAATTATAAAGATGCCATTTGTGACCTAAATGTGGCTAAGATTGCGGAATCATCAATGGGTGGGAAGAGACAAATAGAAAGTGAGCTGAAAATTATTATAGACCAATGCAACACAAGTACAGTAGTACAGCTACAACATAAGGAGAACAGCTTGAATACAGTGGGTGAGATGCCCCAAATAAAACTACAGTGTGTCTCAATGCCTGATAAAGGAAGAGGCATGGTGTCGTCATGTGATATTTCACCTGGTTCTTTGGTTCATGTTGAAGAGCCTTATGCTACGATAATATTAAAGCAATGCCGGGAAACTCATTGTCATTATTGCTTGAATGACCTACCTGCTGATAGAGTTCCTTGTACATCATGTTCAATACCATTGTACTGCTCACACCAATGCCAGATACGGGCAGGTGGGCAAATGTTCAGAATTGGCCCAGGTGATAATGGCATTCTTAAAAACTTACCCAGCGATCTTGGAGAATATGCTGCTGAAGTTATTCAATACAATGATTCTGAACAAGAGATTGAGGATATTACTGAACATAAACATGAATGTCATGGTGTACATTGGCCTGCTGTATTGCCGTCTGAGATTGTTTTGGCTGGCCGGATACTAGCAAGGTTTTTGTCAAAGAGCAGACCTGAAGATATTACAAACATTGTAGAAAAGCTGGGGCTTTCTCATTCTTACAAACATATGCCATTTGAAAGCAAATTGGATTCACATATATATGCCATTGTGTTATTATATTGTCTTCAACACTCTTATGGGACCATGTTTTCCATAGATGGAATCTCTATGTCAAAGGTTGTCATTATTATTTCCCAAATTAAAGTGAATTGTATGACTGTTGTTCGATTGAAATCAATAGATGCTCATGGACTATCAGATCAGTCTGGAACATTTGCATTCCGGTCCAGTGTACATTTAACTAATAATGTGGAACAGGTCAGAGTGGGTAAAGCTATTTATAAAGCTGGCAGTTTATACAACCATTCTTGCCAACCAAATGTTCATGCATACTTTCTCTCACGCACTCTTTATTTACGAACCACAAAAGTTGTAGCTGCTGGACATGAGCTGGAATTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGTTGTAATTTTCTTAAAGATGAATACGCGTTTCATTGTCAGTGTAGCGGTTGTTCAGAAGTCAATCTATCTGACATTGTCCTCAATGCTTTTCATTGTGTCAATCCAAATTGTTCTGGTGCAGTGTTGGAAAGCAGAGTACTTGACAATGAAAAGCAGAAAACCAAAAACTTCCCTATTGTTGGCAAAGTTGACAAGAATGGTGACATTTATGGAGTAGGTCTTCATGCATTCAACCAAAATGATGCCTCTATTCATATTCAACCTGGATGCTGTTTGAAATGTGGTTCTTACTGTGATTTGGATTCTTCACGTGCTGCAGTAAATAAAGCCTTAATATGCATAAAAAGGTTGCAGGATGCAATACTGTCAAGAGAAATTTCAAATACTTCTATTTCAGATGCTTTGAGATCTCTACATTTGCTGAGATCAAATTTACATGCATACAACAAGCTTATTGCAGAGGCAGAAGATAACCTTGCCCAGGCTTTTTGTTTAGTGGGAGAATTACAATTATCTGTGGATCATTGTAAAGCATCTATCCAGGTAAAACTTATATTCATAAGCATACTATCTTACAGGTTGGCTTGTTTCTGCTACTCAGCAAAAGCAAAAACAAACGCGTGGGGAGGAGAAATTTGTTTTGTTACATATTTTTTATTTGCTAGTATCTCTGTGTGTATCTCAGACTTATAA 2286 0.3968 METLKAAIPEGLKRVIGESTVDDLRSTCSSLHRFFLHFEPFHQMVTELADPKYALCGKNKDAALKSKQLGNHCFSNADYAKALDCYTQALRKAPFEAGHTGNNLIASLYINRATVLHKMSLLMECLRDCNRALQICPSYAKAWYRRGKANASLGNYKDAICDLNVAKIAESSMGGKRQIESELKIIIDQCNTSTVVQLQHKENSLNTVGEMPQIKLQCVSMPDKGRGMVSSCDISPGSLVHVEEPYATIILKQCRETHCHYCLNDLPADRVPCTSCSIPLYCSHQCQIRAGGQMFRIGPGDNGILKNLPSDLGEYAAEVIQYNDSEQEIEDITEHKHECHGVHWPAVLPSEIVLAGRILARFLSKSRPEDITNIVEKLGLSHSYKHMPFESKLDSHIYAIVLLYCLQHSYGTMFSIDGISMSKVVIIISQIKVNCMTVVRLKSIDAHGLSDQSGTFAFRSSVHLTNNVEQVRVGKAIYKAGSLYNHSCQPNVHAYFLSRTLYLRTTKVVAAGHELELSYGPQVGLWDCKDRCNFLKDEYAFHCQCSGCSEVNLSDIVLNAFHCVNPNCSGAVLESRVLDNEKQKTKNFPIVGKVDKNGDIYGVGLHAFNQNDASIHIQPGCCLKCGSYCDLDSSRAAVNKALICIKRLQDAILSREISNTSISDALRSLHLLRSNLHAYNKLIAEAEDNLAQAFCLVGELQLSVDHCKASIQVKLIFISILSYRLACFCYSAKAKTNAWGGEICFVTYFLFASISVCISDL. 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02097 761 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 713 - -
Seca3g02097 761 Gene3D Tetratricopeptide repeat domain 525 719 IPR011990 GO:0005515
Seca3g02097 761 Gene3D Tetratricopeptide repeat domain 38 191 IPR011990 GO:0005515
Seca3g02097 761 Gene3D SET domain 418 519 IPR046341 -
Seca3g02097 761 SUPERFAMILY SET domain 208 550 IPR046341 -
Seca3g02097 761 SUPERFAMILY TPR-like 58 166 IPR011990 GO:0005515
Seca3g02097 761 Coils Coil 669 689 - -
Seca3g02097 761 SMART tpr_5 140 173 IPR019734 GO:0005515
Seca3g02097 761 SMART tpr_5 684 717 IPR019734 GO:0005515
Seca3g02097 761 SMART tpr_5 106 139 IPR019734 GO:0005515
Seca3g02097 761 SMART tpr_5 63 96 IPR019734 GO:0005515
Seca3g02097 761 Pfam SET domain 225 520 IPR001214 GO:0005515
Seca3g02097 761 ProSiteProfiles SET domain profile. 212 520 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02097 Seca-Chr3 36782063 36795308 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca3g02097 SET 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02097 K24634 - gmx:100783548 1174.07