Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02093 ATGGAGGAGGTTTTTCTAGCAATGAAAGTGGTTTCTTCATTTGCTCTTGCGGCCATTTTGAGCTGGATGCTTTATGTGTATGGTAATCTATGGCATAAATCCCAAAGGGTCAGAAGGAAGCTCCGAATGCAAGGAATCAGAGGGCCTCCACCTTCTTTTCTACACGGAAATCTACCTGATATGCAGAGAATCCAATCACAGGCTGCAAAAACTCCCACTTTCACCCATTCTGATCAGTTTCTAGCTCATGACTACACTGCATCACTCTTCCCATATTTTGAACACTGGAGAAAACAATACGGTCTACTGTACACTTACTCTACAGGGATGAAGCAACACCTGTATGTGAACCAACCGGATCTAGTGAGAGAAATGAACCAGTGTATCACTTTGGATTTGGGCAAGCCTTCTTATGTAACAAACAAACTTGCACCCCTTCTTGGCAATGGCATTTTGAGAGCCAATGGACTTAGTTGGGCACAACAGAGGAAGCTTGTTGCAGCTGAGTTCTTTATGGACAAAGTTAAGGGTATGGTGGGCCTAATGATAGAGTCAGCACAACCTTTGCTACTAAAATGGGAGCAATGTATTGAGGACCAAGGAGGCGGTGCCGCTGCTGAAGTTAAAGTTGATGCAGATTTGAGGGGCTTCTCAGCTGATGTTATTTCCATGGTTTGTTTTGGCCATTCTTATTCCAAGGGAAAGGAAGTTTTCTCAAAGCTTAGAACCATCCAGAAGATCATGTCCAAGCAAGGTGGCTTCCTTTTTGGGGTCAGCGGTTTCCGGTATGTAAATCCTATATATAGTATTTCTCTAAAATTCATTTCTACTATGAATCAAAATGAGATTACCAGTTTGGAGAGAGAGATAGAGTCATTGATCTGGGAGTTAGTGGAGGAACGAAAGAGAGAATGCTCAGAGACATCCTCATCAGAAAAGGATCTAATGCAGTTACTTCTGGAAGCAGCTATGACTGATCAAAGTCTGGGGAAGGACTTTTCCAAGCGATTCATTGTGGATAATTGCAAAAACATATACTTTGCTGGCCATGAAACTACTGCTGTTGCAGCCTCTTGGTGTTTGATGCTTCTTGCTTTGCACCCAGAATGGCAAGCTCGTATAAGAACAGAGGTGGCTGAACATTGCCCCAATGGCATCCCAGATGCAGATTCTCTCCCTCTCTTGAAAACGGTTACTATGGTGATTCAAGAAGTGCTACGTTTATACCCACCAGCAGCCTTTGTGTCAAGGGAGGCATATAGAGATATCCAAATTGGAGACCTTGTAGTTCCTAAAGGTGTTTGTTTATGGACTCTGATCCCAACATTGCACAGAGATCCTGAAATTTGGGGACCAGATGCTAATGAATTTAAACCAGAAAGGTTCAGTGAGGGTGTCTCTAAGGCTTGCAAGTATCCACAAGCGTATGTGCCATTTGGGGTAGGTAATCGCTTGTGCTTGGGGAAGAACTTTGCAATGGTTGAATTGAAGGTTGTGTTGGCACTAATCATCTCCAAGTTCAGCTTCTCTTTATCTCCTAGTTATAGGCATTCTCCGGCATATAGAATGATTGTAGAGCCAGGACATGGTGTGTATATTATTATTCAGAAGATTTGA 1617 0.4292 MEEVFLAMKVVSSFALAAILSWMLYVYGNLWHKSQRVRRKLRMQGIRGPPPSFLHGNLPDMQRIQSQAAKTPTFTHSDQFLAHDYTASLFPYFEHWRKQYGLLYTYSTGMKQHLYVNQPDLVREMNQCITLDLGKPSYVTNKLAPLLGNGILRANGLSWAQQRKLVAAEFFMDKVKGMVGLMIESAQPLLLKWEQCIEDQGGGAAAEVKVDADLRGFSADVISMVCFGHSYSKGKEVFSKLRTIQKIMSKQGGFLFGVSGFRYVNPIYSISLKFISTMNQNEITSLEREIESLIWELVEERKRECSETSSSEKDLMQLLLEAAMTDQSLGKDFSKRFIVDNCKNIYFAGHETTAVAASWCLMLLALHPEWQARIRTEVAEHCPNGIPDADSLPLLKTVTMVIQEVLRLYPPAAFVSREAYRDIQIGDLVVPKGVCLWTLIPTLHRDPEIWGPDANEFKPERFSEGVSKACKYPQAYVPFGVGNRLCLGKNFAMVELKVVLALIISKFSFSLSPSYRHSPAYRMIVEPGHGVYIIIQKI. 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02093 538 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 479 488 IPR017972 GO:0005506|GO:0016705
Seca3g02093 538 PRINTS P450 superfamily signature 477 486 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g02093 538 PRINTS P450 superfamily signature 348 365 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g02093 538 PRINTS P450 superfamily signature 400 411 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g02093 538 PRINTS P450 superfamily signature 486 497 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g02093 538 PANTHER CYTOCHROME P450 FAMILY MEMBER 27 530 - -
Seca3g02093 538 Gene3D Cytochrome P450 30 538 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g02093 538 SUPERFAMILY Cytochrome P450 84 535 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g02093 538 Coils Coil 283 303 - -
Seca3g02093 538 Pfam Cytochrome P450 87 514 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g02093 538 PRINTS E-class P450 group I signature 97 116 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g02093 538 PRINTS E-class P450 group I signature 357 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g02093 538 PRINTS E-class P450 group I signature 217 235 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g02093 538 PRINTS E-class P450 group I signature 486 509 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g02093 538 PRINTS E-class P450 group I signature 337 354 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca3g02093 538 PRINTS E-class P450 group I signature 476 486 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02093 Seca-Chr3 36711322 36718006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02093 121 533 Cytochrome P450 AT5G24900 57.794 1.36e-179 509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02093 K20661 - gmx:100815776 938.717