Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02088 ATGAAGATTTCCTTGACCGCGACACCACCATCCAGTCCCCATGCAAATCCTCTTTTTGATGCTCAGAAGTTGCAGGCTTGTTCGGCTCGCTACCAGGATCCATTCTTCGAAGGACCTGCAAGGTGTTATCGGCAGATAAAAAATAAGCCATATCCCAAATCACGCTTCTGTCGTGGTGTTCCTGATCCCAAGATCAGAATTTATGATGTTGGTATGAAGAGAAAAGTTGTTGACGAGTTTCCTTTCTGCGTCCATCTGGTTAGTTGGGAGAAGGAAAATGTTTCAAGTGAGGCATTGGAAGCTGCTAGGATTGCATGCAACAAATATATGGCTAAATTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGAGTACATCCGTTCCATGTTCTTAGGATCAACAAAATGCTTTCATGTGCTGTAGCTGATAGGCTTCAGACTGGGATGAGAGGTGCGTTTGGAAAGCCATAG 471 0.4459 MKISLTATPPSSPHANPLFDAQKLQACSARYQDPFFEGPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKVVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAVADRLQTGMRGAFGKP. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02088 156 CDD Ribosomal_L16_L10e 75 156 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca3g02088 156 Gene3D Ribosomal protein L10e/L16 37 156 IPR036920 GO:0003735|GO:0005840|GO:0006412
Seca3g02088 156 Pfam Ribosomal protein L16p/L10e 46 154 IPR016180 GO:0003735|GO:0005840|GO:0006412
Seca3g02088 156 SUPERFAMILY Ribosomal protein L16p/L10e 39 156 IPR036920 GO:0003735|GO:0005840|GO:0006412
Seca3g02088 156 PANTHER 60S RIBOSOMAL PROTEIN L10 39 156 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02088 Seca-Chr3 36673909 36675645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02088 39 155 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 94.017 6.51e-80 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02088 K02866 - apan:127259575 246.899