Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02082 ATGAGTTTGCCTTTGCCCTTTCGTTCTCCACTTTCTGTTGTGATCGATTACTTTACAAATGGTGATTCTTCCGGTGAGCCCATGACCATGATTCATCGCACGCGGTTTCGGGGTCAGTGCGGTTCTGGTTCTGGTGGTGCAACTGAGGATGTTACGCGAGGCACCGTTGGAAATGGAGAGCAAGAGGGGAGTTCCTCGTCGCGGAATCCGGCTGGGGTTGGGACAGTGACGATGGAGGAGGCTGAGGATATGGTTCCTCTGGGTGAGGTGCCTTTGGATGATGTTCTTGGACTTGGTCACGGTAGGGGCAACTATAGCTCTGGTGTTCAGCAGGTTGCAAAGTGGATGGAGCAGATTATCCCTTTCTCCCTCTTGCTGTTCATTGTCATCGTCCGCCAGCATTGGAAAGGCTTCTTTGTCACAACCTGTGTATCAGCTGTGATGTTCATGTCAAATGAATTTGTTAAGAAACAGACAGCTCTAAAGGGAGATCGGAAAGTCTCTGTTCTTCTTGGTATCTCTTTTGTCTTCATGCTGTATGTGATATGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCAACTGGCCATGTTTCCACCAAAAGCAACACCACCTTTCTGGCATACAATATTTATCATTTTGGTTAATGATGCATTGATGCGGCAAGCAGCAATGGCTTTCAAGTGTTTGTTGCTTATTTACTACAAAAATAGAGGAGGCCAGAACTTCGGACAGCAGGGTCAAATGTTAACTTTGGTTGAGTATACTCTACTATTATATCGTGCTTTGTTGCCAACACCAGTTTGGTGCCGATTTCTCTTGAACAAGGATTCTGGAAGTCTCTTTTCATCAGTGACCACAGTATTGTATGTAACTTTGAAGCTGATATTTGTAGTTGACAAGGTCCATTGCTTCCTTCGATCCTTAAAAGCATTATCAAAAAAGGAAGTTCATTATGGGGTTTATGCAACCATGGAACAGGTCAATGCTGGTGGCGGTGAACTGTGCGCTATATGCCAAGAGAAAATGCATGTTCCTATCTTGTTGTGCTGTAAACACATGTTTTGTGAGCAGTGTGTATCTGAATGGTTTGAGAAAGAACGAACCTGTCCATTATGCAGTATATTGGTAAAACCTGCTGATCTTTGGACCTTTGGAGATGGATCAACAAGTCTGTTTCTTCAGTTGTTTTAA 1200 0.4383 MSLPLPFRSPLSVVIDYFTNGDSSGEPMTMIHRTRFRGQCGSGSGGATEDVTRGTVGNGEQEGSSSSRNPAGVGTVTMEEAEDMVPLGEVPLDDVLGLGHGRGNYSSGVQQVAKWMEQIIPFSLLLFIVIVRQHWKGFFVTTCVSAVMFMSNEFVKKQTALKGDRKVSVLLGISFVFMLYVICIYWWYRNDDLLYQLAMFPPKATPPFWHTIFIILVNDALMRQAAMAFKCLLLIYYKNRGGQNFGQQGQMLTLVEYTLLLYRALLPTPVWCRFLLNKDSGSLFSSVTTVLYVTLKLIFVVDKVHCFLRSLKALSKKEVHYGVYATMEQVNAGGGELCAICQEKMHVPILLCCKHMFCEQCVSEWFEKERTCPLCSILVKPADLWTFGDGSTSLFLQLF. 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02082 399 Pfam Ring finger domain 338 375 IPR001841 -
Seca3g02082 399 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 83 399 IPR044235 GO:0061630|GO:1904294
Seca3g02082 399 ProSitePatterns Zinc finger RING-type signature. 353 362 IPR017907 -
Seca3g02082 399 SUPERFAMILY RING/U-box 326 381 - -
Seca3g02082 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 314 383 IPR013083 -
Seca3g02082 399 CDD RING-HC_RNFT1-like 336 375 - -
Seca3g02082 399 MobiDBLite consensus disorder prediction 37 73 - -
Seca3g02082 399 SMART ring_2 338 375 IPR001841 -
Seca3g02082 399 ProSiteProfiles Zinc finger RING-type profile. 338 376 IPR001841 -
Seca3g02082 399 MobiDBLite consensus disorder prediction 45 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02082 Seca-Chr3 36605301 36615027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02082 8 399 C3H Transcription Factor Family AT5G01960 54.768 9.56e-157 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02082 - K22379 gmx:100816630 520.005