Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02064 ATGGCTTCTGCCTCTGCAGCAGGTTCCTCTTCTTGGTCATCTTCAAATTGGGTCATGGAAAGTGGTGATGTTCCTCATGTTTTGGCTGTTGATGACAATCTCATTGACCGCAAACTTGTTGAGAAACTCCTAAGGAATTCTTCTTGCAAAGTTACAACTGCAGAAAATGGGCCAAGGGCATTGGAGTTCTTGGGCTTAACAAGTGGTGAACAGGACAATGCTGTAAGTAGATCCAAAGTAAATTTGGTTATCACAGACTATTGCATGCCAGGGATGACAGGCTATGAGTTACTTAAGAAAATTAAGGAATCATCTGTAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAGTGTCTGGAAGAAGGAGCTCAGATGTTCATGTTAAAGCCCCTCAAACAATCTGATGTAAAAAAACTGACCTGTCAGTTAAAGAACTTAGGAAGGTGA 474 0.4135 MASASAAGSSSWSSSNWVMESGDVPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQDNAVSRSKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVIMSSENIPTRINKCLEEGAQMFMLKPLKQSDVKKLTCQLKNLGR. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02064 157 ProSiteProfiles Response regulatory domain profile. 26 153 IPR001789 GO:0000160
Seca3g02064 157 Pfam Response regulator receiver domain 27 147 IPR001789 GO:0000160
Seca3g02064 157 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 152 IPR045279 GO:0009736
Seca3g02064 157 FunFam Two-component response regulator ORR5 25 155 - -
Seca3g02064 157 Gene3D - 26 157 - -
Seca3g02064 157 SUPERFAMILY CheY-like 25 152 IPR011006 -
Seca3g02064 157 CDD REC_typeA_ARR 27 148 - -
Seca3g02064 157 SMART REC_2 25 149 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02064 Seca-Chr3 36375751 36377942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02064 1 154 Response Regulator Gene Family AT3G56380 67.949 2.13e-65 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g02064 Response_reg 2.1e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02064 K14492 - gmx:100499827 263.077