Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02062 ATGCTCTTGTGTTGTTTCTCTGAGCTCAATTTCACATGGGTGTCTAGAGTTTTGAAAATGCGAGCGTTATCCAAAATGAGAACTCTTCTTATTGTGTGCTTGTTCTCGCTGCTTCTTGTGGCTGTGGCCGCCGTGAACCCCTCTCTGAACGACGACGTTCTGGGGTTGATTGTGTTCAAAGCTGACATTCAAGATCCGAAGGGAAAGTTGGCATCTTGGAACGAAGACGATGAGAATGCGTGTGGGGGTAGTTGGGTGGGAGTGAAATGCAACCCTAGATCCAACAGGGTAGTGGAGCTTACACTTGATGGGTTCTCTCTCTCTGGGAAAATTGGTCGAGGCCTTCAGAAATTGCAATTCCTCCGCAAACTTTCTCTGGCGAACAATAACCTCACAGGGGGCATAAGCCCCAACATTGCTCGTATTGATAACCTTCGGGTCCTTGACTTGAGTGACAACAATCTCTCAGGAGAGGTTCCTGATGATTTTTTCAAACAATGTGGGTCTCTCAGGACTGTTTCTTTGGCAAGGAACAAGTTTTCTGGGAGTGTTCCTTCTAGTTTGGGCTCATGCTCAGCTCTTGCTTCTCTTGACATCTCTTTTAACCAGTTTTCAGGTTCTGTTCCTCCTGGGGTTTGGACTTTGAGTGGACTCAGGTCTCTGGATTTGTCTGATAACATGTTGGAGGGTGAGATTCCAAAAGGGGTTGAGGCGTTGAAGAATTTGAGGAGCATTAGTTTGGCGAGAAACCGGTTTTCTGGGAAGATTCCAGATGGGTTTGGAAGTTGCTTGCTTTTGAGGTCTATTGATTTCAGTGAGAATGCTTTCTCTGGTAGTATTCCTGGAGATTTGAAGGAACTGGTGCTGTGTAGTTACTTTAGTTTGTGTGGAAACGCTTTCTCAGGAGAGGTTCCTGAGTGGATTGGAGAGATGAAGGGCCTTGAGACATTGGACCTCTCGCGGAATGGATTTTCTGGTGAGGTGCCAAACTCTATAGGAAATCTTCAGTCATTGAAGATGTTGAACTTTTCTGCAAATGGTTTCACTGGTAATCTGCCAGAGTCTATGGTGAACTGCACTAACCTTGTGGCCTTGGATGTCAGCCGGAATTCACTGTCCGGAGGACTTCCAACATGGATTTTCAAGTCAGATTTGGCACCAGCAAACAGAATGAGTGGTAGCGTGAAGAGCCCTTTGTATTCCTTGGCTGAAACTGCGGTTCAAAGTCTTCAAGTTTTGGATTTATCTCACAATGCATTTTCTGGTGAAATCACGTCTGCTATTGCAGGTTTAAGCAGCTTGCAGATTTTGAATTTATCAAATAACTCTCTAGGAGGTCCTATACCAGCTGCAATTGGTGAACTGAAAACATGTTCTAGTCTTGATTTGAGTTATAATAAGCTAAACGGAAGCATACCTTGGGAAATAGGAGGAGCTCTATCCTTAAAAGTACTAAAATTGGAACATAACTTCCTAGCTGGGAAAATTCCAACCTCACTTGAGAACTGTTCGTCATTAACAACCTTGATTCTGTCCCAGAACAGGCTGAGTGGGTGGATACCTGCAGCAGTTGCAAAGCTTGCTAACCTGCAAATTGTGGACTTATCATTTAACAACCTTACTGGAGCCCTTCCTAAGCAATTGGCCAACCTCCCCAATCTTCTGTCCTTCAATTTATCTCACAACAACCTTCAGGGTGAACTGCCAGCTGGTGGTTTTTTCAACACCATTTCACCTTCTTCTGTTTCTGGCAATCCATTGCTTTGTGGCTCTGCTGTGAACAAATCATGCCCTGCTGTCCTCCCAAAGCCTATTGTTTTGAATCCCAACACTACTACTGACTCTGGTTCAGGTTCACTGCCTCCAAATTTGGGTCACAAAAGAATCATTCTCAGCATTTCTGCACTCATTGCTATTGGTGCAGCTGCTGTCATTGTAATTGGTGTCATTGGCATCACCGTTCTCAACCTCCGTGTTCGGTCCTCCACAGCTCGATCTGCAGCTGCCCTCACATTTTCTGCTGGGGATGAATTCAGCCATTCCCCAACCACAGATGCCAACTCTGGCAAACTTGTCATGTTTTCAGGTGAGCCTGATTTCAGCTCTGGAGCACATGCCTTGCTTAATAAGGATTGCGAGCTTGGGCGTGGAGGGTTTGGGGCTGTATACCAAACGGTTCTCGGAGATGGGCGTTCAGTTGCTATAAAGAAGCTCACGGTATCAAGCCTTGTCAAGTCTCAAGAAGATTTTGAAAGGGAAGTGAAGAAATTAGGAAAGGTCAGACACCAAAATCTTGTGGAACTTGAAGGTTATTATTGGACATCATCACTGCAGCTCCTCATATACGAGTATGTCTCTGGTGGTAGTCTGTATAAACATCTCCATGAAGGATCAGGTGGAAACTTCCTCTCATGGAATGAGAGGTTCAATGTGATTCTCGGCACAGCAAAGGCCTTGGCTCACTTGCACCACTCCAACATCATCCACTACAACATTAAGTCAACCAATGTCCTTCTTGATAGCTATGGTGAACCTAAAGTAGGCGATTTCGGGCTAGCCAGGCTGTTACCAATGCTCGATCGATATGTTTTGAGCAGCAAAATCCAAAGCGCACTTGGCTACATGGCACCAGAATTTGCCTGCAAAACGGTGAAAATTACTGAGAAATGTGATGTTTATGGGTTTGGAGTATTGGTTTTGGAGATTGTTACAGGGAAGAGGCCTGTAGAGTATATGGAGGATGATGTGGTGGTACTTTGTGACATGGTAAGAGGAGCATTGGAAGAAGGAAGGGTAGAGGAATGTGTTGATGAGAGGCTACAAGGGAAGTTCCCAGCAGAGGAAGCAATTCCTGTGATGAAATTAGGCTTAATATGTACTTCTCAAGTGCCATCTAATAGACCCGACATGGGAGAGGTAGTTAACATTCTGGAGCTAATAAGATGCCCTTCAGAAGGACAAGAAGAGTTGGGATGA 2976 0.4499 MLLCCFSELNFTWVSRVLKMRALSKMRTLLIVCLFSLLLVAVAAVNPSLNDDVLGLIVFKADIQDPKGKLASWNEDDENACGGSWVGVKCNPRSNRVVELTLDGFSLSGKIGRGLQKLQFLRKLSLANNNLTGGISPNIARIDNLRVLDLSDNNLSGEVPDDFFKQCGSLRTVSLARNKFSGSVPSSLGSCSALASLDISFNQFSGSVPPGVWTLSGLRSLDLSDNMLEGEIPKGVEALKNLRSISLARNRFSGKIPDGFGSCLLLRSIDFSENAFSGSIPGDLKELVLCSYFSLCGNAFSGEVPEWIGEMKGLETLDLSRNGFSGEVPNSIGNLQSLKMLNFSANGFTGNLPESMVNCTNLVALDVSRNSLSGGLPTWIFKSDLAPANRMSGSVKSPLYSLAETAVQSLQVLDLSHNAFSGEITSAIAGLSSLQILNLSNNSLGGPIPAAIGELKTCSSLDLSYNKLNGSIPWEIGGALSLKVLKLEHNFLAGKIPTSLENCSSLTTLILSQNRLSGWIPAAVAKLANLQIVDLSFNNLTGALPKQLANLPNLLSFNLSHNNLQGELPAGGFFNTISPSSVSGNPLLCGSAVNKSCPAVLPKPIVLNPNTTTDSGSGSLPPNLGHKRIILSISALIAIGAAAVIVIGVIGITVLNLRVRSSTARSAAALTFSAGDEFSHSPTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLGDGRSVAIKKLTVSSLVKSQEDFEREVKKLGKVRHQNLVELEGYYWTSSLQLLIYEYVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHHSNIIHYNIKSTNVLLDSYGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEIVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECVDERLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELG. 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02062 991 ProSiteProfiles Protein kinase domain profile. 708 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g02062 991 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 331 601 - -
Seca3g02062 991 Gene3D Ribonuclease Inhibitor 287 385 IPR032675 -
Seca3g02062 991 Gene3D Ribonuclease Inhibitor 50 213 IPR032675 -
Seca3g02062 991 Pfam Protein tyrosine and serine/threonine kinase 710 976 IPR001245 GO:0004672|GO:0006468
Seca3g02062 991 Pfam Leucine rich repeat 144 204 IPR001611 GO:0005515
Seca3g02062 991 Pfam Leucine rich repeat 313 372 IPR001611 GO:0005515
Seca3g02062 991 Pfam Leucine rich repeat 505 564 IPR001611 GO:0005515
Seca3g02062 991 Pfam Leucine rich repeat 409 468 IPR001611 GO:0005515
Seca3g02062 991 Gene3D Ribonuclease Inhibitor 386 600 IPR032675 -
Seca3g02062 991 ProSitePatterns Protein kinases ATP-binding region signature. 714 737 IPR017441 GO:0005524
Seca3g02062 991 PRINTS Leucine-rich repeat signature 145 158 - -
Seca3g02062 991 PRINTS Leucine-rich repeat signature 431 444 - -
Seca3g02062 991 Gene3D Ribonuclease Inhibitor 218 286 IPR032675 -
Seca3g02062 991 SUPERFAMILY RNI-like 209 571 - -
Seca3g02062 991 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 785 986 - -
Seca3g02062 991 SUPERFAMILY L domain-like 49 285 - -
Seca3g02062 991 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 702 784 - -
Seca3g02062 991 SMART LRR_typ_2 142 166 IPR003591 -
Seca3g02062 991 SMART LRR_typ_2 215 238 IPR003591 -
Seca3g02062 991 SMART LRR_typ_2 527 550 IPR003591 -
Seca3g02062 991 SMART LRR_typ_2 311 335 IPR003591 -
Seca3g02062 991 SMART LRR_typ_2 431 455 IPR003591 -
Seca3g02062 991 SMART LRR_typ_2 239 263 IPR003591 -
Seca3g02062 991 SMART LRR_typ_2 407 430 IPR003591 -
Seca3g02062 991 SMART LRR_typ_2 551 575 IPR003591 -
Seca3g02062 991 CDD STKc_IRAK 714 980 - -
Seca3g02062 991 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 50 330 - -
Seca3g02062 991 ProSiteProfiles Leucine-rich repeat profile. 144 166 IPR001611 GO:0005515
Seca3g02062 991 SUPERFAMILY Protein kinase-like (PK-like) 711 981 IPR011009 -
Seca3g02062 991 Pfam Leucine Rich Repeat 481 503 IPR001611 GO:0005515
Seca3g02062 991 Gene3D Transferase(Phosphotransferase) domain 1 785 989 - -
Seca3g02062 991 Gene3D Phosphorylase Kinase; domain 1 702 784 - -
Seca3g02062 991 PANTHER OS05G0588300 PROTEIN 331 453 - -
Seca3g02062 991 Pfam Leucine rich repeat N-terminal domain 50 91 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02062 Seca-Chr3 36321572 36326394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02062 34 991 Receptor kinase-like Gene Family AT3G56370 68.634 0.0 1291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Seca3g02062 PK_Tyr_Ser-Thr 5.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02062 - - gmx:100791629 1609.73