Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02057 ATGTCTTCCGAAAACATAGGTCTCGTTCCTGACCAGAGAATCGAAAACGGTCTCACTTCACCCCTCGTCTTCCGTGACGATCCCTTGCGCTTCAACTGCGGTGCCCCACAACGCCGGGTCGGGGACCCGGTTCCGAAAACCGGGGAACTTGGCGGGTTCATCGACGACAAGATGTTCGCCGTCGACCGCGACCGCTTTTTCACCGCCCAGGGCACCGAGTTCCGCCGGAACGTTTATGCCGATTGCTCCGGCCGCCGGGACCCGCCCGATGGCCGCAATTGGAGCGGGAACGGAAGCACCGCAACTCCCAGCGGCGATGAATCGGACGGCGACGATGATGAAGACGACGATGAAGATGACGACGACGACGACGACGATGATGGCGGCGCTGAAGTAGAAGGTCTCGTTGGTGTTGGTGATGGGAGCAAGCGCAATTCTAATGCAATCGGTGACGTTAACAATAACAACGGTGGTGGTGGTAATTTGCCTGGTGTTGCAAATGGAAAAGCCCAGCATCGTTCCCCCTATGTTTCTGGTAGAGAGCTATTGGGAAAGGATGGTGATATTGGGCAGTTGGTGCATAATAATGCGAGTGGTACTACTGATGAAGATCATCAGCGAGAAAGATTAGGTAAATCCCAGAATTCTGTCACCGTTGCTGAAACTGACTGTGAGGAGTACTATTCTCACTATCTTCAAGGCGCGGAAGGGTCAGCTTCTGTGCAGAAAGTTATGGTGGATGACAATGGTTGTGGTTTTAGTGGAAGAAAGGATGTTATGTATTCAAGCGAGTCCGGGGAGTCATTAAGGGCAATTCTTTCAGATCCTGTTACGGGAGCTCTTATGGATGATGCTATGATATTACCTTGTGGACATTCATTTGGTGGAGGTGGAATACAACATGTTATTAGAATGAAAGCTTGCTGCACTTGTTCTCAACTCACATCTGAGGAATCAATATCTCCAAACCTATCACTTCGAGCTGCTGTACAGGCATACCGTCGGGAAGAGGAGTCACAATTTTACCGGTCATTCAAAAGAAGAAGAGAAAGGTTTGATCAGGGTGGTTTTGGGGATTCAGCTGTTATGGAACCACCAAGGAGTAGAGGTGTTCAATTTCCATTTGCTGTGATGGACCGAGTTGTCATAAAGGGGAACAAAAGGACACCACAACGCTTTGTTGGGCGTGAAGCTATTGTAACAACACAATGCCTGAACGGATGGTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTGAAATTGCAGTATCGCTCCCTTGCTAAGGTTTTGGCAGATCCCTCAAAACCTGCCTCCAGCAAGATGGGACCTAATTGGCCTTAG 1344 0.4978 MSSENIGLVPDQRIENGLTSPLVFRDDPLRFNCGAPQRRVGDPVPKTGELGGFIDDKMFAVDRDRFFTAQGTEFRRNVYADCSGRRDPPDGRNWSGNGSTATPSGDESDGDDDEDDDEDDDDDDDDDGGAEVEGLVGVGDGSKRNSNAIGDVNNNNGGGGNLPGVANGKAQHRSPYVSGRELLGKDGDIGQLVHNNASGTTDEDHQRERLGKSQNSVTVAETDCEEYYSHYLQGAEGSASVQKVMVDDNGCGFSGRKDVMYSSESGESLRAILSDPVTGALMDDAMILPCGHSFGGGGIQHVIRMKACCTCSQLTSEESISPNLSLRAAVQAYRREEESQFYRSFKRRRERFDQGGFGDSAVMEPPRSRGVQFPFAVMDRVVIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVLADPSKPASSKMGPNWP. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02057 447 SUPERFAMILY RING/U-box 267 340 - -
Seca3g02057 447 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 268 338 IPR013083 -
Seca3g02057 447 MobiDBLite consensus disorder prediction 146 161 - -
Seca3g02057 447 MobiDBLite consensus disorder prediction 80 172 - -
Seca3g02057 447 MobiDBLite consensus disorder prediction 194 216 - -
Seca3g02057 447 MobiDBLite consensus disorder prediction 106 131 - -
Seca3g02057 447 ProSiteProfiles U-box domain profile. 268 340 IPR003613 GO:0004842|GO:0016567
Seca3g02057 447 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 10 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02057 Seca-Chr3 36229770 36235073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02057 213 446 Plant U-box Gene Family AT5G05230 59.751 4.92e-87 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02057 - - gmx:100791099 617.846