Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02053 ATGGAATTTGATTCCCTTGAGGATGTTAAAGAGTTATACACATCATTTGCTAAGAAAACGGGTTTTGGTATTCGTACTCGTTCAACTAAAGAGAATTTTTGTATACTTGTATGTTCTAATGAAGGCAAGCATATAGTCAAGAATGGTGGGGGAAAAACAAAGAAAAAGTGCTCAACGTCAAGAACAGATTGTAAGGCATCACTTGTTGTTTCAAAAGCATGGAAGAGAAGCAAATGGATTATCAAAAGCTTTGATAATGCTCATAATCATGCCATGATCAGCCCTAAGAGTGTGAGTTATCTTCGATGTCATAAGAAAATGAGCAAAGCGGCTAAAAACCTTGTTGAGAAGTTTGATGAAGAAGGGGTGCCTACAGGAAAGGTTGCCGCTATGTTTAATGGTGGAGATATATCTTTCTCTGATAGGGATTGCTGGAATCATCTTAGAAATGTTAGAAGAAGAAATCTTGATATTGGAGATGCCCAAGCTATTTTGAACTTTTGTAAAGAAAAGCAAGCTGAAAATCCATATTTCTTCTATGCAATACAATGTGATGATGAAGATAGAATGATAAATTTTTTTTGGGTAGACGCAAGATCAAGAATGGCATATAAGAATTTTGGAGATGTCATTACATTTGATACAACATATAGGACCAACAAGTACAACATGCCTTTTGCTCCTTTTACTGGGTTGAATCATCATTGCCAATCCATATTATTTGGTTGTGCTTTATTACAAGATGAGACTGAGAAGACTTTCGAATGGCTATTTCACACTTGGCTCGAGGCAATGGGTGAGGATTTTGAAGAAGACTGGGAGCGTATAATGATTGCTTATGATTTGAAGAAGAATGAATGGCTTCAAGGCTTATACAATATAAGAGATTCATGGGTGCCTGTTTATAATAGAGGAACTTTTTTTGGTGGGATGAACACTACACAGAGGAGTGAGAGTATAAATGCTTTTTTTGATGCCTTTGTTAATTCTTCAACAACACTACGAGATTTTGTAGTGAAGTTTGACAAGGCAATGGATAGTCGCTATGAAAAAGAAAGAAGAGAAGATTTTGAGTCCAGGCATCGATCACGTCTCTTAGATATTAAATCAAAGATTGGGGAGCATGCTGCATCAATTTATACAAGAGCCATTTTTGGGAAGTTTCATGATGAACTGGCCAAGATTAATCAATTCACAAAGGAGAAGATTGAAAAGAATGGGTCTCAGTATACATACAGGGTATCCAACTGTTTTGAGTCTCGGGACACAGTTACGGTTTGTGTGGATCTTGATACAAAGGTTGCTAATTGCAGTTGCCAACTATATGAATTTTCGGGGATTTTATGTAGACATATCTTGGTTATTTTTCAAGCAAAAAATATCATTGAAATTCCAAGTAATTATATTTTAGAGCGTTGGACAAAAGACGCTAACAGGGTCATTGGATTTAATGAAAATGGAGCAACTTCTTCATGTGATGCTAATAATTCAGTAACTCTGCGAAGTATACATGTGCATAGTCAAGCTAGTTTATTATCTGATCTTGCTGCAAAATCTGAGAATTTATACATGTTCATATCATCTGAAATGGAGCAAACATACAAAAGAGCTATAGCAATGGAATCTGAAATGTGCCTTGAAAATGAGGTTTTTCCCCAAGAGGCCAGTTGTCAAAATCTGTTATGTGAACAGGTAAGTGCTTCTCCTGAATCAAATATTAGAGATCCACTCATGTCACAAACTAAAGGAAGAAAAAAAGATGCATTGAAAATGACTCAACAGGGAAGGATCAAAAGCAGTCTAGAGTTGTCAATAAATCGATCTCTAGTAAAAAGAAGATCATGTCAAGTATGTGGACAACATGGTCACAATCGACGAAGTTGTAAGCAAAAGATAAATGATGAATCTATTGATCAACCTACTTGA 1926 0.3588 MEFDSLEDVKELYTSFAKKTGFGIRTRSTKENFCILVCSNEGKHIVKNGGGKTKKKCSTSRTDCKASLVVSKAWKRSKWIIKSFDNAHNHAMISPKSVSYLRCHKKMSKAAKNLVEKFDEEGVPTGKVAAMFNGGDISFSDRDCWNHLRNVRRRNLDIGDAQAILNFCKEKQAENPYFFYAIQCDDEDRMINFFWVDARSRMAYKNFGDVITFDTTYRTNKYNMPFAPFTGLNHHCQSILFGCALLQDETEKTFEWLFHTWLEAMGEDFEEDWERIMIAYDLKKNEWLQGLYNIRDSWVPVYNRGTFFGGMNTTQRSESINAFFDAFVNSSTTLRDFVVKFDKAMDSRYEKERREDFESRHRSRLLDIKSKIGEHAASIYTRAIFGKFHDELAKINQFTKEKIEKNGSQYTYRVSNCFESRDTVTVCVDLDTKVANCSCQLYEFSGILCRHILVIFQAKNIIEIPSNYILERWTKDANRVIGFNENGATSSCDANNSVTLRSIHVHSQASLLSDLAAKSENLYMFISSEMEQTYKRAIAMESEMCLENEVFPQEASCQNLLCEQVSASPESNIRDPLMSQTKGRKKDALKMTQQGRIKSSLELSINRSLVKRRSCQVCGQHGHNRRSCKQKINDESIDQPT. 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02053 641 MobiDBLite consensus disorder prediction 571 593 - -
Seca3g02053 641 SMART 26again6 435 462 IPR006564 GO:0008270
Seca3g02053 641 Pfam FAR1 DNA-binding domain 12 92 IPR004330 -
Seca3g02053 641 Pfam SWIM zinc finger 428 460 IPR007527 GO:0008270
Seca3g02053 641 ProSiteProfiles Zinc finger CCHC-type profile. 615 630 IPR001878 GO:0003676|GO:0008270
Seca3g02053 641 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 267 535 IPR031052 GO:0006355
Seca3g02053 641 Pfam MULE transposase domain 210 267 IPR018289 -
Seca3g02053 641 ProSiteProfiles Zinc finger SWIM-type profile. 424 460 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02053 Seca-Chr3 36095705 36097854 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g02053 FAR1 1e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02053 - - aprc:113859540 556.599