Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02047 ATGGCTCTTCATCACCGTCCCCACCGCCTTTTGCTTGACACAGATTCAAGCTTAACTTCACCAGGTAACATGAATAGATCAAGGGAATCTTTCACAGGTAGCTCAAATTTTGACACCAACATGGTGTTTATCTTGGCTGCTTTGCTTTGTGCACTTATATGTGCTCTTGGACTCAACTCAATTGTGCGCTGTGCTCTAAGATGTAGCCGCAGGTTTGCTTTTGAGACACCAGATGAAGCAGTAGCTCGTTTAGCCTCAAAAGGCCTAAAGAAGAGTGCATTGCATCAGATCCCTATAGTTGTTTATGGTTCAGGCACTAATAGTATTGCAGCCACTGAATGTCCAATTTGCCTTGGGGAGTTTATGGATGGGGAGAAAGTTAGAGTGCTACCAAAATGTAACCATGGATTCCATGTAAGGTGCATAGATACATGGCTCCTCTCACACTCTTCTTGTCCTACTTGCAGACAGTCCTTGCTTGAGCATCCAGCCATTTCTGAAGCTACAACTGTAGCTGTAGCTGTTGCTGCAACTGCAGGAACCACACACCATGTAGAAAATGCCTTAGTAGCACATGATCATGGCCCTTTAGCTGATATTGTGGATGAGGTTGGCTAA 618 0.4466 MALHHRPHRLLLDTDSSLTSPGNMNRSRESFTGSSNFDTNMVFILAALLCALICALGLNSIVRCALRCSRRFAFETPDEAVARLASKGLKKSALHQIPIVVYGSGTNSIAATECPICLGEFMDGEKVRVLPKCNHGFHVRCIDTWLLSHSSCPTCRQSLLEHPAISEATTVAVAVAATAGTTHHVENALVAHDHGPLADIVDEVG. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02047 205 SUPERFAMILY RING/U-box 113 163 - -
Seca3g02047 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 164 IPR013083 -
Seca3g02047 205 SMART ring_2 114 155 IPR001841 -
Seca3g02047 205 PANTHER RING-H2 FINGER PROTEIN ATL78 21 163 IPR044602 GO:0016567|GO:0016740
Seca3g02047 205 CDD RING-H2_EL5-like 113 156 - -
Seca3g02047 205 Pfam Ring finger domain 113 156 IPR001841 -
Seca3g02047 205 SMART FANCL_C_2 110 160 - -
Seca3g02047 205 FunFam RING-H2 finger protein ATL72-like 80 160 - -
Seca3g02047 205 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02047 Seca-Chr3 35903397 35904857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02047 9 164 C3H Transcription Factor Family AT3G10910 61.310 1.92e-62 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02047 - K19040 gmx:100787273 294.278