Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02045 ATGTCATTTGGGTTTCTCATGAGAATGTTATCAATCATTGCAGGAGGGGCTTGTGGTTATGGCAATTTATACAGCCAAGGCTATGGGACTAACACTGCAGCACTCAGCACTGCTCTTTTCAACAATGGCTTGAGTTGTGGGTCTTGCTATGAGATGAGATGTGACAGTGACCCTAAATGGTGCCTTCCTGGAAGCATAATAGTTACTGCCACAAACTTCTGCCCTCCTAACTTTGCATTGTCTAATAGCAATGGTGGTTGGTGCAACCCTCCTCTGCAGCACTTTGATCTTGCTGAGCCTGCTTTCTTACAAATTGCACAATACAAAGCTGGAATTGTTCCTGTTTCCTTCAGAAGAGTTTCCTGTGTGAAGAAAGGAGGAATCAGGTTCACCATCAATGGTCACTCTTACTTTAACTTGGTTCTGATCACAAATGTTGGTGGTGCTGGGGATGTCCATTCAGTGTCCATCAAGGGGTCTAGGACAGGGTGGCAAACAATGTCTAGGAACTGGGGACAAAATTGGCAGAGCAACTCTTACCTCAATGGCCAGAGCCTCTCTTTCCAGGTCACTACCAGTGATGGCAGGATTGTCACTAGCAACAACATTGTACCTGCTAATTGGCAATTTGGACAGACATTTGAGGGGGCACAGTTTTAG 660 0.4545 MSFGFLMRMLSIIAGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCDSDPKWCLPGSIIVTATNFCPPNFALSNSNGGWCNPPLQHFDLAEPAFLQIAQYKAGIVPVSFRRVSCVKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSRTGWQTMSRNWGQNWQSNSYLNGQSLSFQVTTSDGRIVTSNNIVPANWQFGQTFEGAQF. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02045 219 PRINTS Expansin/Lol pI family signature 110 126 IPR007118 GO:0005576
Seca3g02045 219 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Seca3g02045 219 PRINTS Expansin/Lol pI family signature 36 54 IPR007118 GO:0005576
Seca3g02045 219 PRINTS Expansin/Lol pI family signature 164 178 IPR007118 GO:0005576
Seca3g02045 219 PRINTS Expansin/Lol pI family signature 14 32 IPR007118 GO:0005576
Seca3g02045 219 PRINTS Expansin signature 126 138 IPR002963 GO:0009664
Seca3g02045 219 PRINTS Expansin signature 66 76 IPR002963 GO:0009664
Seca3g02045 219 PRINTS Expansin signature 202 218 IPR002963 GO:0009664
Seca3g02045 219 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Seca3g02045 219 PRINTS Expansin signature 138 159 IPR002963 GO:0009664
Seca3g02045 219 PRINTS Expansin signature 54 65 IPR002963 GO:0009664
Seca3g02045 219 PRINTS Expansin signature 27 41 IPR002963 GO:0009664
Seca3g02045 219 PRINTS Expansin signature 85 102 IPR002963 GO:0009664
Seca3g02045 219 PRINTS Expansin signature 102 115 IPR002963 GO:0009664
Seca3g02045 219 Gene3D - 126 219 IPR036749 -
Seca3g02045 219 SMART dpbb_1 32 117 IPR007112 -
Seca3g02045 219 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 15 127 IPR007112 -
Seca3g02045 219 PANTHER EXPANSIN-A15 14 219 IPR002963 GO:0009664
Seca3g02045 219 Gene3D - 7 122 IPR036908 -
Seca3g02045 219 SUPERFAMILY PHL pollen allergen 124 216 IPR036749 -
Seca3g02045 219 Pfam Expansin C-terminal domain 128 205 IPR007117 -
Seca3g02045 219 CDD DPBB_EXPA_N 15 122 - -
Seca3g02045 219 Pfam Lytic transglycolase 32 117 IPR009009 -
Seca3g02045 219 FunFam Expansin 127 219 - -
Seca3g02045 219 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 137 216 IPR007117 -
Seca3g02045 219 SUPERFAMILY Barwin-like endoglucanases 14 145 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02045 Seca-Chr3 35878632 35879956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02045 15 219 Expansin Gene Family AT2G40610 83.010 8.95e-131 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02045 - K20628 gmx:547673 429.869