Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02026 ATGGCTTCCTCTTTGTCCAACGGAGACCACAGTGCCGTTCGTTTCCCCTTGTCTCCCTCCACCGCTTTGGTCATTCAGAAAGGTGACATCACCCAATGGTCCATCGATGCTTCCTCCGACGCAATAGTAAATCCAGCAAATGAGAGAATGCTTGGAGGTGGAGGCGCAGATGGAGCCATACATAGGGCTGCTGGTCCAGAACTTCTTGAGGCATGCTACAATGTTCCAGAAGTGAGGCCTGGAATTCGCTGCCCAACAGGGGAAGCAAGGATCACACCGGGTTTTAGATTGCCTGCTTCTCATGTTGTTCATACTGTGGGACCAATCTATGATTCCAACAGTAACCCTGCTGCCTCTCTGGCAAGTGCTTACAGGAATAGTTTGAGGGTTGCAAAAGAGAAGAATATTCAGTATATAGCATTCCCTGCCATATCATGTGGTGTCTTTGGGTAA 453 0.4901 MASSLSNGDHSAVRFPLSPSTALVIQKGDITQWSIDASSDAIVNPANERMLGGGGADGAIHRAAGPELLEACYNVPEVRPGIRCPTGEARITPGFRLPASHVVHTVGPIYDSNSNPAASLASAYRNSLRVAKEKNIQYIAFPAISCGVFG. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02026 150 SMART YBR022w_8 22 150 IPR002589 -
Seca3g02026 150 Pfam Macro domain 43 150 IPR002589 -
Seca3g02026 150 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 15 150 - -
Seca3g02026 150 Gene3D Leucine Aminopeptidase, subunit E, domain 1 3 150 IPR043472 -
Seca3g02026 150 CDD Macro_OAADPr_deacetylase 23 150 - -
Seca3g02026 150 ProSiteProfiles Macro domain profile. 10 150 IPR002589 -
Seca3g02026 150 SUPERFAMILY Macro domain-like 20 150 IPR043472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02026 Seca-Chr3 35628120 35631510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02026 28 133 C2H2 Transcription Factor Family AT5G01310 31.933 5.96e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02026 K23518 - cave:132188147 251.521