Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02023 ATGAATTACACACTTATAACTGACTATTTGATTGTGGGCTCCCAACCACAGAAACCTGAAGATGTAGATCACCTCAAAAAGGAAGAAGGGGTGGCATACATTCTAAACTTGCAACAGGATAAGGATGTTGAATATTGGGGAGTAGACTTGAAGTCAATAATTAGAAGGTGTCGTGAACTTGAAATTACCCACATGAGGAGGCCGGCAATAGACTTTGATCCAAATTCCTTGCGAAAAGAGCTACCTAAAGCGGTCTCATCCTTGGATTGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTTCATTGTACTGCTGGACTTGGAAGGGCTCCGGCAGTGGCAATTGCATATTTGTTCTGGTTTCGTGACATGAATCTAAATACAGCATATGATATGCTAACTTCAAAGAGACCCTGTGGACCAAATAAAAAAGCAATACGCGGAGCTACTTATGATTTGGCCAAGGATGATCCATGGAAGGAGGCATTTGAGAGTCTTCCAGAACATGCTTTTGAGGATGTAGCAGACTGGGAGAGGAACTTGATTCAAAATCGTGTCCGGTCCCTCCATGGAACTTGA 579 0.4266 MNYTLITDYLIVGSQPQKPEDVDHLKKEEGVAYILNLQQDKDVEYWGVDLKSIIRRCRELEITHMRRPAIDFDPNSLRKELPKAVSSLDWAISEGKGRVYVHCTAGLGRAPAVAIAYLFWFRDMNLNTAYDMLTSKRPCGPNKKAIRGATYDLAKDDPWKEAFESLPEHAFEDVADWERNLIQNRVRSLHGT. 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02023 192 CDD DSP_laforin-like 1 148 IPR045204 GO:0019203
Seca3g02023 192 Gene3D Protein tyrosine phosphatase superfamily 1 192 IPR029021 -
Seca3g02023 192 Pfam Dual specificity phosphatase, catalytic domain 23 142 IPR000340 GO:0008138|GO:0016311
Seca3g02023 192 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 1 192 - -
Seca3g02023 192 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 171 - -
Seca3g02023 192 SMART dsp_5 2 144 IPR020422 GO:0006470|GO:0008138
Seca3g02023 192 ProSiteProfiles Dual specificity protein phosphatase domain profile. 2 159 IPR020422 GO:0006470|GO:0008138
Seca3g02023 192 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 79 138 IPR000387 GO:0016311|GO:0016791
Seca3g02023 192 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 2 144 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02023 Seca-Chr3 35560180 35563573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02023 1 192 Protein tyrosine phosphatase (PTP) family AT3G10940 81.250 8.86e-121 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02023 - - gmx:100787079 359.377