Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02016 ATGTCCAGAGAAAGGGAGAGATTGGATGAGATAGGGAAGAAGATAAAGAGGGAAGGAGATCATGTTTCTTCTCCTCAAATGGGAAGGAGACAAATGTTGGGTCCACCAGGAACCCTAAATACCATAACCCCATGTGCAGCATGTAAGCTATTGAGAAGAAGATGTGCCCAAGAATGTCCCTTTTCTCCATATTTCTCTCCCCATGAGCCCCAGAAGTTTGCTTCTGTCCATAAAGTGTTTGGTGCCAGCAACGTCTCAAAGATGCTAATGGAGGTGGCAGAGTATCAGAGAGCAGATGCAGCAAATAGTCTAGTTTATGAGGCTAACGTGAGGCTAAGAGATCCTGTTTATGGATGCATGGGTGCAATTTCTGCTCTGCAACAACAAGTTCAATCTTTACAAGGTGAACTCAATGCAGTAAGAGCTGAAATACTCAAATACAAACTCAGGGAAGCTAACATCATCATACCCTCTTCTCATGTTGCATTTCTCCCTTCCTCTGCTGCTGCTGTTTCAAATATTGCTGTTGCTCCACCACCACCACCTCCACCTTTACCTCCTCCTCTTCTTCCTCCAAGTACTTCTTCCATGTACAATATCCAACAGAGGGATCCCTCCAATTATAGCAGATCAGTTTCAAGTGATAATAACATGTCCTATTTTGGTTAA 669 0.435 MSRERERLDEIGKKIKREGDHVSSPQMGRRQMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVAEYQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQGELNAVRAEILKYKLREANIIIPSSHVAFLPSSAAAVSNIAVAPPPPPPPLPPPLLPPSTSSMYNIQQRDPSNYSRSVSSDNNMSYFG. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02016 222 Pfam Lateral organ boundaries (LOB) domain 44 141 IPR004883 -
Seca3g02016 222 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 40 194 - -
Seca3g02016 222 MobiDBLite consensus disorder prediction 181 222 - -
Seca3g02016 222 MobiDBLite consensus disorder prediction 194 222 - -
Seca3g02016 222 MobiDBLite consensus disorder prediction 16 35 - -
Seca3g02016 222 Coils Coil 123 150 - -
Seca3g02016 222 ProSiteProfiles LOB domain profile. 43 144 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02016 Seca-Chr3 35350230 35351668 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02016 29 169 AS2 family AT2G40470 84.028 5.21e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca3g02016 LOB 7.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02016 - - gmx:100786324 309.301