Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02015 ATGCATAGTTATTCAAAAAAGAAAGACGTTATTGAAGCTGGGGTTTTACAACCAGTCATTGGCTTACTGAGTTCCCCTTGTTTGGAGAGCCAAAGAGAAGCTGCTCTTTTAATCGGTCAATTTGCTGCAACAGATTCAGAATGCAAGGTTCACATTGCACAAAGAGGGGCTATAAAACCATTAATTGACATGCTTAAGTCTCCAGATGCAAATCTTAGGGAAATGTCAACTTTTGCGCTTGGGAGGTTGGCACAGGACTCACATAATCAAGCTGGTATTGCTCATAACGGAGGTATAGAGCCTCTGCTGAGTCTTCTTGACTCAAAGAATAGGGCCGTCCAACACAATGCAGCTTTTGCTCTATATGGTCTTGCTGATAATGAGGTAAAAATAGTTTCCTTCTTCTTTACTTGTAAACATCATATGTTTCCCTTTATTATCATTAATGCATAG 453 0.3974 MHSYSKKKDVIEAGVLQPVIGLLSSPCLESQREAALLIGQFAATDSECKVHIAQRGAIKPLIDMLKSPDANLREMSTFALGRLAQDSHNQAGIAHNGGIEPLLSLLDSKNRAVQHNAAFALYGLADNEVKIVSFFFTCKHHMFPFIIINA. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02015 150 SUPERFAMILY ARM repeat 6 135 IPR016024 -
Seca3g02015 150 Gene3D - 1 141 IPR011989 -
Seca3g02015 150 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 56 98 IPR000225 GO:0005515
Seca3g02015 150 SMART arm_5 86 126 IPR000225 GO:0005515
Seca3g02015 150 SMART arm_5 45 85 IPR000225 GO:0005515
Seca3g02015 150 SMART arm_5 3 43 IPR000225 GO:0005515
Seca3g02015 150 Pfam Armadillo/beta-catenin-like repeat 45 84 IPR000225 GO:0005515
Seca3g02015 150 Pfam Armadillo/beta-catenin-like repeat 7 37 IPR000225 GO:0005515
Seca3g02015 150 Pfam Armadillo/beta-catenin-like repeat 93 124 IPR000225 GO:0005515
Seca3g02015 150 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 134 IPR044282 -
Seca3g02015 150 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 97 128 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02015 Seca-Chr3 35334463 35335289 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02015 23 131 U-box Gene Family AT5G42340 33.929 6.68e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02015 - - tpra:123892242 206.838