Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02014 ATGTCCAGAGAAAGGGAGAGATTGGATGAGATAGGGAAGAAGATAAAGAGGGAAGGAGATCATGTTTCTTCTCCTCAAATGGGAAGGAGACAAATGTTGGGTCCACCAGGAACCCTAAATACCATAACCCCTTGTGCAGCATGTAAGCTATTGAGAAGAAGATGTGCCCAAGAATGTCCCTTTTCTCCATATTTCTCTCCCCATGAGCCCCAGAAGTTTGCTTTTGTCCATAAAGTGTTTGGTGCCAGCAACGAGGTGGCAGAGTATCAGAGAGCAGATGCAGCAAATAGTCTAGTTTATGAAGCTAACTTGAGGCTAAGAGATCCTGTTTATGGATGCATGGGTGCAATTTCTGCTTTGCAACAACAAGTTCAATCTTTACAAGCTGAACTCAATGCAGTAAGAGCTGAAATACTCAAATACAAACTCAGGGAAGCTAACATCATCATACCCCACTAG 459 0.4314 MSRERERLDEIGKKIKREGDHVSSPQMGRRQMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFAFVHKVFGASNEVAEYQRADAANSLVYEANLRLRDPVYGCMGAISALQQQVQSLQAELNAVRAEILKYKLREANIIIPH. 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02014 152 MobiDBLite consensus disorder prediction 16 35 - -
Seca3g02014 152 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 40 143 - -
Seca3g02014 152 Pfam Lateral organ boundaries (LOB) domain 44 135 IPR004883 -
Seca3g02014 152 ProSiteProfiles LOB domain profile. 43 138 IPR004883 -
Seca3g02014 152 Coils Coil 117 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02014 Seca-Chr3 35331939 35332812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02014 10 149 AS2 family AT2G30340 68.182 1.55e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca3g02014 LOB 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02014 - - zju:107413969 259.61