Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02006 ATGTCAAGGATGAGAAACCAAACTGTGGGAAGCCCAAAATCCAGGAAGAACATCTTTGACAACTCTTCAAAAGATCAAGACCAGTTCCTCCCAGTAGCCAACATCAACCGTATCATGAAAAGGGCACTCCCAGCCAATGCCAAAATCTCTAAGGAAGCCAAAGAAAAAGTCCAAGAATGTGTCTCTGAATTCATAAGCTTCATCACTGGTGAAGCATCTGAGAAGTGCCAAAGAGAAAAGAGGAAGACAATTACCGGGGATGATCTTCTTTGGGCTATGACTACTCTGGGATTTGAGAACTATGTTGGACCCTTGAAGGTCTACTTGAACAACTTCAGAGAAAATGAGGGAGAAAAGAGTGATGCTGCTAATACTAATAATCATTCTTCAACAGAAGAGGATGATATGAATGGGGTTGCTGAAATCAACAAATTGGCTAGTGTTGTGTCAACCAATGTAGATTTTCCCAATTTCAATGGTGGATTTTACTCTGTTGAGCCTCAATTAAACTTAACACTGATAGGGGGTGTCACTACCGGTTACAGAGAGATTTGCATGAACAGGGCTATTTCTCAGAATGTGGTCATCGGTGATGTATATGCAAATGGTAATATTATATGA 621 0.4058 MSRMRNQTVGSPKSRKNIFDNSSKDQDQFLPVANINRIMKRALPANAKISKEAKEKVQECVSEFISFITGEASEKCQREKRKTITGDDLLWAMTTLGFENYVGPLKVYLNNFRENEGEKSDAANTNNHSSTEEDDMNGVAEINKLASVVSTNVDFPNFNGGFYSVEPQLNLTLIGGVTTGYREICMNRAISQNVVIGDVYANGNII. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02006 206 ProSitePatterns NF-YB/HAP3 subunit signature. 60 76 IPR003956 GO:0005634|GO:0006355|GO:0043565
Seca3g02006 206 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Seca3g02006 206 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Seca3g02006 206 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
Seca3g02006 206 FunFam Nuclear transcription factor Y subunit B-3 19 142 - -
Seca3g02006 206 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 29 93 IPR003958 -
Seca3g02006 206 MobiDBLite consensus disorder prediction 1 23 - -
Seca3g02006 206 MobiDBLite consensus disorder prediction 117 137 - -
Seca3g02006 206 SUPERFAMILY Histone-fold 26 135 IPR009072 GO:0046982
Seca3g02006 206 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 19 133 IPR027113 GO:0001228|GO:0006355|GO:0016602
Seca3g02006 206 Gene3D Histone, subunit A 16 147 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02006 Seca-Chr3 35225344 35225964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g02006 22 123 CCAAT-HAP3 Transcription Factor Family AT4G14540 79.412 5.44e-58 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Seca3g02006 CBFD_NFYB_HMF 8.9e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02006 K08065 - gmx:100810059 238.81