Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g02005 ATGGAGCACAATGTATGTCAATCACTTGAAGTTAATGAGCATAAAGATATTTTTCTTGGCCAAGTTGTTTATAACAAAGATGAAGCTTATGCCTTGTACCAAGAACATGCATTCAAAATGGGTTTTAGTGTGAGAAAAGGGAGGGAGTTGTATTATGATATTGAAAAAAAGAACACTCGTTTGAAGGATTATTATTGCTCTAAACAAGGGTTTAAGAACAATGAACTTGTAGGTGAAGTGGCTTATGAAAGAGCAGATTCAAGAACAGATTGCAAAGCTATGGTGAGATTTAATGTGAGTAAGGATGGAGTATGGAAAATTACAAAGTTAGAACTGAATCATAACCATGACTTTGTGCCACAAGAGCAAAAACATTTGCTACGTTCTATGAGAGGCGTATCAAATGCCAAAGGAGGCCTCATTAATTCCATGGTGAATGCAGGTATGAAAGTTACAAATATTTGGAGTTATTTGGGGGAAGAAGTTGGTGGATTTGATAATCTTGGTATTACAATGAAAGATATGCATAATTATGTCTACTCTGAAAAGTTGAAATTAATTGATGCTGGTGATGCTCAGGCTTTAGTGAATCACTTGCAAAGTAGACAGGCACAAGATGCAATGTTCTACTATAGTGTGCAATTAGACCAGGAATCACGTTTGACTAATGTATTTTGGAGATATGGTAAATCTAAAGTTGATTATGATTGCTTTGGGGATGTTGTGATTTTTGACACCACTTACCGTACCAATAAATATAACTTGATTTGTGCCCCCTTTGTTGGTGTAAATCATCATTGGCAAAATGTCATGTATGGTTGTGCTTTGTTATCTGATGAAACTGCAATTTCTTTCACTTGGTTGTTCAAAGTGTTTTTGGAAAGTATGGGAAACCAACAACCAAAAACCATCTTTACAGATCAAGATGCAGCTATGGCAAAAGCAATTGGAGAGGTAATGCCAAACACATGTCATCGATTATGCTTGTGGCATATAGCAAAAAATGCTCCTTCTCATTTGGGTTCTCTAAATTCTGACAATAAGTTTCAAAGCTTATTCAATAAATGCATGAAAGGTTGTGATTCAGAAGAAGAATTTCAAAGCACTTGGGATGAAATGATAAATGAGTATAAACTTCATGATCATCAATGGTTGAGCAATATGTATAAAATTCGTCACAAGTGGAGCACTGCTTTTAGCAAGAATATATTTTCTGCAGGTATCAAGTCTTCTCAAAGGAGCGAAAGTACAAACAGTGTGTTGGGTGAGATTGCAGGAAAAACAACAAGTCTCACACAATTCTTAGTGGCATTTGAGAAGATGGTAAAAAAGTGGCGCTACTTAGAAGTTGAGAAAGAATTCAAAAATAGTCAAAGTGCACCTCCTCGTATTATAAATATTAGTGAGACTCTACGACATGCATCTTTGATATATACTCATAAGATATTTAAACTATTTTTGAATGAATATCTTGAAGGGACAGGTGGAAGCACTTCTATGGAGATTGGTGGGTGTAATAATGTGTCATATCATGAAGTTATTTTTAACCATATGCCTAATAAGAAGTATCAGGTAACATTTGACTCTTCCACTATGATGATTAATTGCAGCTGTCACAAGTTTGATTCTATGGGTATTCTGTGTAGTCATGCCTTGCGAATTTACAACATTAAAGGTATTTTAAAAATACCCGACCAATACTTCTTAAAAAGATGGTCAAAAAGTGCAAGGTCCATGATTTATGAGCACATAAATAGGGGTTCGAAAGAAGATTCTAGCTCTAATGTCATTAACTCAATGACCAATGGTGATGATGCTGGTATTCTTTATCGCAATGCTATTATGAAGTCATTTTATAATCTGGTTTTGGAAACTCAAGAACACAAAGAAACTCAGCAAATTATGTGGAAATTGCTTGATATTGGAGTTGAGCAAGTGCAACAATGTATTGGTAAGCTCAATTTAAATTCAAATGCAGAAACCATTGAGAACAAATTCACTCAAATTGAGGATAATGAATGGGCTGCAATTTTTAATCCTCCTCTTGCAAAGACCAAAGGAATGTCTACTGCTCGCAAGAAGGGGCATTTTGAGAAAAGGAAGCGATCAACCACAAAAACAAAGCAAAATAAAGAGAAACAAAAAGAAGATGGGTTTTGTGCTGTTAATTCTTCTACAATTGAGCTAACTAATGTTTTGAATTGCATGGATAAGTCAGCAATCTTGTGA 2229 0.3504 MEHNVCQSLEVNEHKDIFLGQVVYNKDEAYALYQEHAFKMGFSVRKGRELYYDIEKKNTRLKDYYCSKQGFKNNELVGEVAYERADSRTDCKAMVRFNVSKDGVWKITKLELNHNHDFVPQEQKHLLRSMRGVSNAKGGLINSMVNAGMKVTNIWSYLGEEVGGFDNLGITMKDMHNYVYSEKLKLIDAGDAQALVNHLQSRQAQDAMFYYSVQLDQESRLTNVFWRYGKSKVDYDCFGDVVIFDTTYRTNKYNLICAPFVGVNHHWQNVMYGCALLSDETAISFTWLFKVFLESMGNQQPKTIFTDQDAAMAKAIGEVMPNTCHRLCLWHIAKNAPSHLGSLNSDNKFQSLFNKCMKGCDSEEEFQSTWDEMINEYKLHDHQWLSNMYKIRHKWSTAFSKNIFSAGIKSSQRSESTNSVLGEIAGKTTSLTQFLVAFEKMVKKWRYLEVEKEFKNSQSAPPRIINISETLRHASLIYTHKIFKLFLNEYLEGTGGSTSMEIGGCNNVSYHEVIFNHMPNKKYQVTFDSSTMMINCSCHKFDSMGILCSHALRIYNIKGILKIPDQYFLKRWSKSARSMIYEHINRGSKEDSSSNVINSMTNGDDAGILYRNAIMKSFYNLVLETQEHKETQQIMWKLLDIGVEQVQQCIGKLNLNSNAETIENKFTQIEDNEWAAIFNPPLAKTKGMSTARKKGHFEKRKRSTTKTKQNKEKQKEDGFCAVNSSTIELTNVLNCMDKSAIL. 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g02005 742 Coils Coil 652 672 - -
Seca3g02005 742 MobiDBLite consensus disorder prediction 689 708 - -
Seca3g02005 742 SMART 26again6 534 561 IPR006564 GO:0008270
Seca3g02005 742 ProSiteProfiles Zinc finger SWIM-type profile. 523 559 IPR007527 GO:0008270
Seca3g02005 742 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 13 647 IPR031052 GO:0006355
Seca3g02005 742 Pfam MULE transposase domain 241 335 IPR018289 -
Seca3g02005 742 MobiDBLite consensus disorder prediction 686 716 - -
Seca3g02005 742 Pfam FAR1 DNA-binding domain 32 119 IPR004330 -
Seca3g02005 742 Pfam SWIM zinc finger 523 554 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g02005 Seca-Chr3 35214315 35217137 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g02005 MULE 1.1e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g02005 - - tpra:123905334 1156.74