LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g01992	ATGGCGCCGAAGCAGGGAAGAGTAAGGGGAAGCAGAAACCCCGAATTGATTAGGGGAATTGGAAAGTATTCAAGGGGGCAGATGTACCACAAGAGGGGTCTCTGGGCTATTAAGGCTAAGAACGGCGGTGTTTTCCCTCGCCACGATCCCAATCCTAAGCCTGAAGCTCCCGCTGAGAAGCCACCCAAGTTCTACCCCGCCGATGATGTCAAGAAGCCACTAGTCAACAAGCACAAGCCCAAACCCACTAAACTAAGGGCTAGCATTACTGCTGGGACAGTGCTGATTCTGCTTGCCGGCAGATTTAAGGGAAAGAGAGTAGTGTTTCTTAAGCAGCTTCCTTCTGGGTTGCTTCTTGTAACCGGTCCTTTCAAGATCAATGGAGTTCCTTTGAGACGTGTGAATCAGTCCTATGTTATTGCAACATCAACCAAAGTAGATGTTTCTGCTGTTAATGTGGATAAATTTGATGACAAGTACTTCTCAAAGGAAGTCCAGAAAAAGAAAAAGAAGGGAGAAGGCGAGTTCTTTGAGGCAGAGAAGGAGGACAAAAATGTGCGTCCCCAGGAGAAGAAAGATGACCAAAAAACTTTGGATTCCGCTTTGACAAAAAACATAGAGAGTGTTCCAGACTTGAAGGCCTATCTAGGTGCCAGGTTTTCCTTGAAAGCAGGCATGAAGCCTCATGAGCTAGTCTTCTAG	702	0.4672	MAPKQGRVRGSRNPELIRGIGKYSRGQMYHKRGLWAIKAKNGGVFPRHDPNPKPEAPAEKPPKFYPADDVKKPLVNKHKPKPTKLRASITAGTVLILLAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVDVSAVNVDKFDDKYFSKEVQKKKKKGEGEFFEAEKEDKNVRPQEKKDDQKTLDSALTKNIESVPDLKAYLGARFSLKAGMKPHELVF.	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g01992	233	CDD	KOW_RPL6	81	233	IPR041997	-
	Seca3g01992	233	Pfam	Ribosomal protein L6e	126	233	IPR000915	GO:0003735\|GO:0005840\|GO:0006412
	Seca3g01992	233	MobiDBLite	consensus disorder prediction	52	76	-	-
	Seca3g01992	233	Pfam	Ribosomal protein L6, N-terminal domain	3	61	IPR005568	GO:0003735\|GO:0005840\|GO:0006412
	Seca3g01992	233	Gene3D	-	87	172	IPR014722	-
	Seca3g01992	233	PANTHER	60S RIBOSOMAL PROTEIN L6	7	233	IPR000915	GO:0003735\|GO:0005840\|GO:0006412
	Seca3g01992	233	ProSitePatterns	Ribosomal protein L6e signature.	127	145	IPR000915	GO:0003735\|GO:0005840\|GO:0006412
	Seca3g01992	233	SUPERFAMILY	Translation proteins SH3-like domain	87	177	IPR008991	-
	Seca3g01992	233	MobiDBLite	consensus disorder prediction	41	81	-	-
	Seca3g01992	233	MobiDBLite	consensus disorder prediction	176	199	-	-
	Seca3g01992	233	FunFam	60S ribosomal protein L6	87	171	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g01992	Seca-Chr3	35003202	35004729	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g01992	1	233	Cytoplasmic Ribosomal Protein Gene Family	AT1G74050	78.112	7.33e-116	328

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g01992	K02934		-	cit:102608733	390.963